RNA id: TU1352390


Basic Information

Item Value
RNA id TU1352390
length 720
RNA type TUCP
GC content 0.50
exon number 3
gene id LOC110486767
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52374824 ~ 52390015 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCCCCCTCCACAATCCCACCCCTGTTGACAATGATCACTCCCTTGAGGCCCCTACCATCATTGAAtgaaaaaatgtaattaattCTTTCAACATTGTGCTCACCAGGCGATTCATGGTTACCGGGAGACAGAGCGTGCTCAGTGGGGAGCGGTGTGTGAGGGGGTGATGGATCGCCTCCGAGCTGTGGCTTTCTCTGAGGGCAGCCCTCTCCTAGGCCCTGTGCATGTCCTGGACCTGGACAAGGCTGGATACATCAAACCACACATCGACAGTGTCAAGttctGTGGCAGCACTATAGCAGGGCTGAGTTTGTTGTCAGACAGTGTGATGCGCTTGGTGAGGGAGGATGAACCTGCTGAATGGCTGAACCTGTTTCTGCCCCGTCGCTCTCTCTACATACTCAGAGAGTTCCCCGCCATCGCCGCATCTCTGTCATCTGCCGGAACCTTCCTGTTTGAAGCATGAGAGCCAAGAGGGACACAACTGTGACAGTCTCACTGGCAGTAGCCAGAGCTCGGTATCTGAGACTTCAAGAACATCACTGTGCTAAAATGTGATGTACACGCTTTCTCACTGCGAGAGACTATGTTGGGAAAGATGATTTAGATGTTTCCCTTATCAGTTTTCATTGGAGCACTTCATAATAAACTACCTGTACAGGATTTGATTCTGAATTAAATGTTGGGAAGGCATTCAGGTATGATGCATTTCAAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352413 lncRNA upstream 19392 52350048 ~ 52359478 (+) True G1185900
TU1352410 lncRNA upstream 31969 52346113 ~ 52346901 (+) True G1185898
TU1352336 lncRNA upstream 120669 52257351 ~ 52258201 (+) True G1185841
TU1352264 lncRNA upstream 132332 52244813 ~ 52246538 (+) True G1185788
TU1352329 lncRNA upstream 144028 52233787 ~ 52234842 (+) True G1185835
TU1352397 lncRNA downstream 13826 52403022 ~ 52403680 (+) True G1185887
TU1352463 lncRNA downstream 95283 52484479 ~ 52485136 (+) True G1185940
TU1352445 lncRNA downstream 221828 52611024 ~ 52612079 (+) False LOC110486773
TU1352446 lncRNA downstream 221984 52611180 ~ 52612158 (+) True LOC110486773
TU1352441 lncRNA downstream 223048 52612244 ~ 52613700 (+) False LOC110486772
XM_021558582.2 mRNA upstream 236140 52141273 ~ 52142730 (+) True LOC110486765
XM_021558580.2 mRNA upstream 239371 52121483 ~ 52139499 (+) False LOC110486764
XM_021558581.2 mRNA upstream 239371 52121755 ~ 52139499 (+) False LOC110486764
XM_036941449.1 mRNA upstream 287187 52066336 ~ 52091683 (+) False LOC110485215
XM_036941463.1 mRNA downstream 16981 52406177 ~ 52414576 (+) True LOC110485217
XR_005035768.1 mRNA downstream 54793 52443989 ~ 52444998 (+) True LOC118938557
XM_021558588.2 mRNA downstream 63598 52452794 ~ 52612169 (+) False LOC110486773
XR_002468113.2 mRNA downstream 223052 52612248 ~ 52616218 (+) False LOC110486772
LOC118938093 mRNA downstream 296667 52685863 ~ 52688094 (+) True LOC118938093
TU1352351 other upstream 22929 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 202365 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 246843 52121577 ~ 52132027 (+) True LOC110486764
TU1351972 other upstream 309255 52046133 ~ 52069615 (+) False LOC110485215
TU1353565 other downstream 614856 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 1057227 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 1057227 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1799371 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1799371 54188567 ~ 54194138 (+) False G1187452

Expression Profile