RNA id: XM_036941461.1


Basic Information

Item Value
RNA id XM_036941461.1
length 2470
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110486769
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52415319 ~ 52430034 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAaaaggtttatggttaggttggGTAGGGACGTCCAAAGGATACCAGATAGTACTAACCCAAGACAAATATTTAACTAACGACTGCATGAGTAACGTTAGCTACCAGATATTAAGTGCTAGATACATACTAATATGAAATGTTATCCATGACTTACGTTTGATTACCTATAAAGCAACATATTTTTGTTTCGCACATTTTGAAGAGGTGATCACTTACAGGTGACTGCTTGACTAAGAATAGGGGCATACTGCCTCTGTATACAGTCGACCATGGCGTCATTGGGTGGCAGCAGTTCCTCTTCTACAGAGTACATAGTCCGGGTCCCCAAgaacaCCAGTAAGAAGTACAGCATCATGGCCTTTAACTCTGGGGACAAAGTAAACTGCTCCTCCTGGACCCAGGCGCGTATGGAGCGGGACATGAGTAACAGGAGGATGTATGGTGTGGAGGAGACTGAGGAGGGGGCGGCAGGCAGTGAGTTTGGGAAGAAGCAGAGGGAGGAGGCACgcaggaagaagtttggaatcgtCACCAGGGAGTTCAAGGTGGAGGACCAACCCTGGATCCTCAAGGTCAACGGCAAGGCAGGGAAGAGGTTCAAGGGTACGAAGAAAGGGGGCATAACGGAGAATGCGTCCTACTACATCTTTACCCAGTGTCCCGACGGGGCCTTTGAGGCCTTCCCCGTCAACGGTTGGTACAACTTCGTGCCCCAGGCCAAACACCGCACGCTGACCGccgaggaggcagaggaggagtggggcagGAGGAACAAGGTGGTGAACCACTTCAGCATCATGCTCCAGAGGCGCCTGCGGGAGCAGGAGAGAGGGCCGGACGATGACGACGAGGAGGGCGAGAAGGGggggaagaagaaaaagaagaagggaggaagaggaggggaccTGCGCATCCATGACCTGGAGGATGACCTGGAGCTGAGCAGTGACGAGAGCGACAGCAGTGGAGGAGAAGATGGAGACAGCAAGCCCAAGAAGAAAGAGGGGGATGTGAAGGGgaaggtgaagaagaagaagaagaagaagaggggcaGTGACAGCGAGGCGAATGAGGACAGTGACGATGGAGACTTTGAGGGCCTGGAAGTCGACTACATGTCAGATGAGagcagTTCAGAGGAAGAGGTCGGCGAAGAGAAGGCCAAGTCCAATAAAGAGGCCGTTCCCAAAGGAATCGACGAGGCATcggagagtgaggaagagagcgaggaggagaaacagaacgaggaagaggggaaagaggaggaggaggaagaggaagggaagaagaccCCAGTCCAGAcgaagaagaagagagacAGCAGCGGTGAGTCGGACACTTCGGAGGACAGCGACATCGATGGAGAGGCAGCCTCCGCTCTCttcatgAAGCGTACTCCTCCTAAGCGCGGTGGTGGGCGTGGCTCTGGAGGCAGCTCCAGGACTGGCAGTCGCCCTGGAACACCGTCCATAGACTCCGCCTCCACCTCCAACACACTCCGAGCCGCCGCTAGCAAACTGGagcaagGTAAGAGACAGGTGGTGGGTGGTAGCTCTGAGTCTCCAGCTGCCAAGAGGCTGAAGATGGAGTCCAGCAGTACGGCTGTCACCACCCAGAGTCCTGCCCCCTCAGGGAAGAGCACGCCACAGCCCCCCTCAGGCAAATCAACCCCCAGTTCCAGTGACGTTCAGCTGACGGAGGAGGCGGTGCGTCGCTACCTGATCCGGAAGCCCATGACCACCAAGGACCTGCTGAAGAAGTTCCAGACCAAGAGGACTGGCCTGAGCAGCGAGCAGACGGTCAACGTCCTGGCCCAGATCCTCAAACGCCTCAACCCTGAGAGGAAGAACGTCAACGACAAGATGCACTTCTACCTCACAGAGTAAACCGGgctcgtgttcattagggcatgcgTTTTAAAATGGAGACTGAGTCCAAGTTCCTCTTTCAGTCcctttggtgcctaatgaacacgacctagggagggaggaggagatgaataGGAGAGGAAGAGCATGAACGCAAAGTCCTCATTGATTGATCagcggaaggaggagaaggatagAACAGGGTCCTTGGAAGAGGAAGGGtagaagaggaagagagtggaataAGGTAGAAAGAAGTGTTACGCAACTGTGATTTGAGATGCGGTGTGTAAACTAGCCTCAATGTCTGTCTCTAGAAATGGTCAACTGTACCTGTGGCAGTCCTTTCAGGTCAAACAACTTACTCTTACAATATATAGGTTTATCAATGAATTACGCAGATGTGACGGTATCAATGAAAACATTCCGTGTAGATCTTGCCTGCTGACTCATCTCCCACCACAACCCACTGGATTCAACAAGACAAGTGTGGGTTATTTTGTACGATTTGCCATATCTCCCCAGGCCTCTATTTCTCATTTTAGAATTGtcttttttgtttattttcatttgtAATAAAAACCCTGCTGTTGCTGTG

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03138 TFIIF1, GTF2F1, TFG1; transcription initiation factor TFIIF subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353212 lncRNA downstream 744 52413280 ~ 52414575 (-) True G1186571
TU1353207 lncRNA downstream 3588 52411236 ~ 52411731 (-) True G1186568
TU1353206 lncRNA downstream 4911 52409630 ~ 52410408 (-) True G1186567
TU1353205 lncRNA downstream 7034 52408075 ~ 52408285 (-) True G1186566
TU1353203 lncRNA downstream 10398 52403070 ~ 52404921 (-) True G1186564
TU1353281 lncRNA upstream 145274 52575308 ~ 52581052 (-) False G1186639
TU1353282 lncRNA upstream 145274 52575308 ~ 52582717 (-) True G1186639
TU1353284 lncRNA upstream 151097 52581131 ~ 52582088 (-) False G1186641
TU1353285 lncRNA upstream 151634 52581668 ~ 52582088 (-) True G1186641
TU1353277 lncRNA upstream 181267 52611301 ~ 52612079 (-) True G1186635
XM_036939765.1 mRNA downstream 83743 52155640 ~ 52331576 (-) False LOC110485216
XR_005035590.1 mRNA downstream 225616 52186557 ~ 52189703 (-) False LOC110538721
XR_005035591.1 mRNA downstream 225616 52186557 ~ 52189703 (-) True LOC110538721
XR_005035767.1 mRNA downstream 313362 52100885 ~ 52101957 (-) True LOC118938556
XM_036941454.1 mRNA downstream 808317 51592159 ~ 51607002 (-) True LOC110486749
XR_005035593.1 mRNA upstream 300344 52730378 ~ 52741276 (-) False LOC110486776
XR_005035594.1 mRNA upstream 300344 52730378 ~ 52741276 (-) False LOC110486776
XR_005035595.1 mRNA upstream 300344 52730378 ~ 52741276 (-) False LOC110486776
XM_036941469.1 mRNA upstream 300344 52730378 ~ 52741513 (-) False LOC110486776
XM_036941468.1 mRNA upstream 300344 52730378 ~ 52741555 (-) True LOC110486776
TU1352962 other downstream 384659 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 386345 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 404108 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 925078 51489777 ~ 51490241 (-) True G1186154
TU1352611 other downstream 1041365 51352309 ~ 51373954 (-) True G1186075
TU1353318 other upstream 229297 52659331 ~ 52659809 (-) True G1186670
TU1354707 other upstream 1176990 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1376610 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 2018849 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 2035499 54465533 ~ 54470838 (-) True G1188127

Expression Profile