RNA id: TU1352441


Basic Information

Item Value
RNA id TU1352441
length 1457
lncRNA type sense_over
GC content 0.46
exon number 1
gene id LOC110486772
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52612244 ~ 52616224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagagagagggagagcgagcgagagagagagggagagagacagagagagagagagagagagagagagagagagagagagagagcaatacaaAGGGGGAAAAGATGGTGATTGTGAACAGAGCTGTCAAGcagtctctccctcctatccctCAGATCATCCATGCTATTGGATGGTGCACAAACATTTGCATTTCAATAGTGGCTGTCATAGTCACAGCAGGCGGAGACGAATAAAAAGGAAAAACTGAAAACACTCAGGGAGGCTTTACGGTGTGAGGATGCAGGCTTTTATTGTGTCTCAAATGCCACTCTATTCCCtaaacagtgcactacttttgaccagggccaatgggGAATAGGCTGCCCTTTGTGACGCAGGCTTTGGGTCTTCAGTCAGCCATAGCACAGGACGAGCCAACCAGGCAGGCAGGGTAATGCACTGTGATACAGGCCAGACGTAACCTCCTGTGAAGATAGGGAATTGACACAGCAGTGTAAAACAGTAGCCCCACCCCTGGAGCAGAGACATGCCGCTAGGAGCTCCAGGGAGGAGGATCAGGTATCTGGCCCTACATGTTGATCTATGATCAGACATTTAACCTGGACCCTGTGAATGGGACTCAGATTGTGAACAGCTGTATTGTTGTTATCGGTGTCTTGGGTAGCGGTCGCTGTGACTTACTAGGTTCtatagacagatacagagagagatggagagaccgtAAAACACAGAGATAAAAAAAAGAGAGTAAGAAAAGCGAAGGGAGAGAGATACATTCTGCGTATTGTGCATATTCATGTCAGCAGATTAATGTGGGTCAACAGAGCTAAAATACAGACAATGTGCATCATTTGATGTGAGCACTTTGTGTGCTGCTGGCAATCCTTTTGTCGAGATGAATGTGGCTTAAAACGTCCATGCCACGTTTAATAATGTGATCAAAAATGTATCGTGGTCTTTAACTGGTGACCCACTTCACACAGGTTCACCCACACAGTTCCACTGTACAGCAGTTCTAGCTCAAGAGAATAATACCCCTCTTATTTCATAACAACTGAAGGAGGGGCGGAGTAAGGAGGTACACCTTTAATTAACACCAACACCTCTTTCTGGATATTAACACCATGAGCGTCCACTTTAATTAGACACACTAATTAGCAATTAAACAAGACTGTGTCATGGGGAggttgtgtacgtgtgtgtgtgtgcacgcacgctggtgtgtgtgtgtgtgtgtgtgtgtgtgtatagggtcGGTCAATATGCAGCAGTGGGTTGTGTGTAGAGTCCTTAAGCTAATTGAATTAGATCTGCCTGCCTGGCTCGAGAGTTGATTAGGAGTCTGTGAGATTGGAATATTGACAGGCAACTGTGGAGAAATGCATAAACAAGGAGAGAACAGCTCATATCCACCtacacgcacagagagagagagagagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352446 lncRNA upstream 86 52611180 ~ 52612158 (+) True LOC110486773
TU1352445 lncRNA upstream 165 52611024 ~ 52612079 (+) False LOC110486773
TU1352463 lncRNA upstream 127108 52484479 ~ 52485136 (+) True G1185940
TU1352397 lncRNA upstream 208564 52403022 ~ 52403680 (+) True G1185887
TU1352413 lncRNA upstream 252766 52350048 ~ 52359478 (+) True G1185900
TU1352443 lncRNA downstream 62 52613762 ~ 52614800 (+) False LOC110486772
TU1352437 lncRNA downstream 1778 52615478 ~ 52616224 (+) True LOC110486772
TU1352439 lncRNA downstream 3994 52617694 ~ 52621108 (+) False G1185921
TU1352440 lncRNA downstream 4063 52617763 ~ 52621551 (+) True G1185921
TU1352435 lncRNA downstream 7982 52621682 ~ 52624208 (+) False G1185919
XM_021558588.2 mRNA upstream 75 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 167246 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 197668 52406177 ~ 52414576 (+) True LOC110485217
XM_036941457.1 mRNA upstream 222229 52374824 ~ 52390015 (+) False LOC110486767
XM_036941456.1 mRNA upstream 222229 52374825 ~ 52390015 (+) False LOC110486767
LOC118938093 mRNA downstream 72163 52685863 ~ 52688094 (+) True LOC118938093
XM_036941464.1 mRNA downstream 91851 52705551 ~ 52731809 (+) False LOC110486774
XM_036941465.1 mRNA downstream 91851 52705551 ~ 52731809 (+) False LOC110486774
XM_036941466.1 mRNA downstream 91851 52705551 ~ 52731809 (+) False LOC110486774
XM_036941467.1 mRNA downstream 91851 52705551 ~ 52731809 (+) True LOC110486774
TU1352390 other upstream 223048 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 256303 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 435739 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 480217 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 542629 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 390352 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 832723 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 832723 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1574867 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1574867 54188567 ~ 54194138 (+) False G1187452

Expression Profile