RNA id: TU1352443


Basic Information

Item Value
RNA id TU1352443
length 1039
lncRNA type sense_over
GC content 0.40
exon number 1
gene id LOC110486772
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52612244 ~ 52616224 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagagagagagagagagagagagagagggtacatTCACCTAGTCCACTTTAATGCATGACCCAGCTGTTAACCTTTTCAGTAGAGTGACCTGTATGTATTAATCCTATAGGAGGCAGTCTGTCATTGTAAAAGCTGGCTGCGTATGAAGgaccagtgttggggagtagtgaactacatgtagtccAACTAGTAACTACATTTTGCAGGAACTTGATGGTAGCTGAGTTAAATTACAATCTTAGTCGTGTTTTCAGTAGTTCATTACTTTTCTGCCATGTAGAGGTCTGGCTagctactggaactacacactacttttttTGTGCAAAAAGTAGGAAAAAAAACGAAACggcatcagacctgcctaattctcacttgagacatagtttttgtgtttaataggaTAAATGACACATTCTGTTAACGTCTATCTACAGAGCGATCTGTTCTTGCTATTTGTATTCTATGACATTTCAAATGTACATATCATTTTTCATGGAGTAGTTTGGATGCAGTGAACTGCTTTTTAAAAGTAACTTTAGTTCAGTAAACTATAAACTCTTTCTTAAGGGCAGCTTTAGTGTAgtttaacttcttccagtgtgcagtaattggtagcttggaaaactatattttcagagcaGCTTCCCCAACAGTGTCAAGGACACACTGACAGGTTGTAGTCACCTCTCTAGAGAAATGGGAAGCAGGGGATATCCTGTGCTGAAGTCTCCCAGGTTAGATGGACCGATATGATTTACTATGACTTACATACAGCATTTTAGTGCATTGAATGAACTCTCCAGAGGTGATGCATTTGATTTAAAATAGGGGTCAATAGGGTACGTTTCTATCAATAGCAACAGTGTTGTAGTGTGATGTAAGGTGGTAGCCAAGGAGATACTTTTCATAAGGAGAAAATGTTCCGAAAGGGAATttcagcctccctctctctctttctctttctttcgctTCTTCACCCTCTGTGTCCTCTTGTATGAGTGTTCACTGTtccacactgcacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352441 lncRNA upstream 62 52612244 ~ 52613700 (+) False LOC110486772
TU1352446 lncRNA upstream 1604 52611180 ~ 52612158 (+) True LOC110486773
TU1352445 lncRNA upstream 1683 52611024 ~ 52612079 (+) False LOC110486773
TU1352463 lncRNA upstream 128626 52484479 ~ 52485136 (+) True G1185940
TU1352397 lncRNA upstream 210082 52403022 ~ 52403680 (+) True G1185887
TU1352437 lncRNA downstream 678 52615478 ~ 52616224 (+) True LOC110486772
TU1352439 lncRNA downstream 2894 52617694 ~ 52621108 (+) False G1185921
TU1352440 lncRNA downstream 2963 52617763 ~ 52621551 (+) True G1185921
TU1352435 lncRNA downstream 6882 52621682 ~ 52624208 (+) False G1185919
TU1352436 lncRNA downstream 7519 52622319 ~ 52624208 (+) True G1185919
XM_021558588.2 mRNA upstream 1593 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 168764 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 199186 52406177 ~ 52414576 (+) True LOC110485217
XM_036941457.1 mRNA upstream 223747 52374824 ~ 52390015 (+) False LOC110486767
LOC118938093 mRNA downstream 71063 52685863 ~ 52688094 (+) True LOC118938093
XM_036941464.1 mRNA downstream 90751 52705551 ~ 52731809 (+) False LOC110486774
XM_036941465.1 mRNA downstream 90751 52705551 ~ 52731809 (+) False LOC110486774
XM_036941466.1 mRNA downstream 90751 52705551 ~ 52731809 (+) False LOC110486774
XM_036941467.1 mRNA downstream 90751 52705551 ~ 52731809 (+) True LOC110486774
TU1352390 other upstream 224566 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 257821 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 437257 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 481735 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 544147 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 389252 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 831623 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 831623 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1573767 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1573767 54188567 ~ 54194138 (+) False G1187452

Expression Profile