RNA id: XM_036941464.1


Basic Information

Item Value
RNA id XM_036941464.1
length 4820
RNA type mRNA
GC content 0.51
exon number 21
gene id LOC110486774
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52705551 ~ 52731809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTACTTTTCATATTGGAAAACATTGGAGAAGCGCAGTGATACCAAAGAGAAACGCACCGCAGACAGGTGCATGACGCAAAACAGAAACCCCAGTAGTAGCAGATTTGGCTATTTTTACAACTAAGAAACGCCATCGGAAAACATTGGACAGCCTTTGTAATTGTACAGAATGACAATAAGAGTCGGTGCTAGTATCTGATCTCCCTCCTTTCCCAGAGTGGTTGtctacaccaacacacaccttATTCATTCTGCTCTCCTCCGGCATGTCAGGTGGTTACACTCCAGCCCCTGGGGGCCCCTTCTCAGCCCTGACCTCCAGTATGTGGCCCCAGGACATCCTGGCCAAGTACTATCAGAAGGACCCAACAGAGGAGGCAGAACTGCAGTATGATGAGTTTGGCTTCAGGCTGGACAGTGATGatGGTGTAGAGCCAGAGCCGAGGCCAGAGCCCCAGAGAGAGGACCCCCAGCAGAGGCTGCGCTGGCAGGCCCACCTGGAGTTCACCCACAACCACAccgtaggagacctgacctgggACCTCATCTCCCCCGTCCTGCCCCACTCTGAACGCCTCCGCTCCCTGGTGCTGGGGGGCATACCACACAGCATGAGACCACAGTTGTGGATGCGTCTGTCTGGAGCTCTGCAGAAGAAAAGGACTACAGAGATATCCTACAAAGAGATCGTTAAGAACAGCACCAACGACGAGACCACTGCTGCCAAACAGGTACTGGATGCTGAGaTAGAGAAGGACCTGTTGCGGACCATGCCCTCCAACGCGTGTTTCTGCAGCCTGCAGAGTGTGGGTGTTCCCAGGCTGAGGCGGGTACTGCGGGGCCTGGCATGGCTCTACCCAGACATTGGCTACTGCCAGGGCACAGGCATGGTGGTGTCATGTCTGTTGCTGTTCCTGGAGGAGGAGGACGTGCTGTGGATGATGTGTGCCCTGATCGAGGACCTGCTGCCACCCTCCTACTTCTCCTCCACCCTGCTGGGGgtccagacagaccagagggtcCTCAGACAGCTCATAGTCCAGTATCTACCAAGCCTGGACAGGCTTCTGCAGGAGCACGACATcgagtTGTCTCTGATCACGCTGCACTGGTTCCTGACATCGTTTGCCAGTGTGGTGGACATCCGCATCCTGCTGAGGATCTGGGACCTGCTGTTCTACCAGGGCTCTGTGGTCCTCTTCCAGGTCACACTGGGCATGCTCAAGATCAAGGAGGTtgaccttctcctctctcccctacaggAGGAGGAGCTGGTGTCCTCTGAGAACTCTGCGTCCATCTTCAACACGCTGTCCGATCTGCCCAGCCAGCTGGGTGACGGGGCTGCAGTACTGGGGGAGGCCATGAGGCTGGCGGGGGCGCTGTCCCAGGACACACTGGAGGCCCAGAGGAACAAACACCTGGCTTACATCCTCAATGAGCAGGCCCAGCTCAACACCAACAACTCCCACACACTCAACAACAACCTCAATAAAgTTGTGAGGAGACAGTCGCTACGTAGGAAGTCCACTCTGAGCTCTCTGTTGTGGGGTGAGGACGAGGCGGAGGCTCTCAAGTCTAAGAACATCAAGCAGACAGAGCTGGTAGCAGCGCTCCGAGAGGCCATCACCCGCACCGCTGAACACTTCCACTGTCTGGACCCCCGACACACCAGCACTgaCCTGACTCCAGACTACTCCATGGAGAGCCACCAGAGAGACCACGAGAACTTCCTGGTTGTGTCTCGTAACCGACGGAGACGGGCCAAAGCCCTGTTGGACTTTGAGCGCCATGACGACGACGAACTGGGCTTTAGGAAGAACGACATCATCACAATTTTTTCCCAGAAAGATGAGCACTGTTGGGTGGGAGAGCTCAACGGGCTGAGAGGTTGGTTTCCAGCCAAGTTCGTAGAAATCCTCGATGAGCGGAGCAAAGAGTACTCTCTGGCGGGTGATGACTCGGTGACTGAGGCGGTGACAGACCTGGTCAGAGGGACGTTGTGTCCTGCCCTGAAGGCCATCTTCCAACACGGTTTGAAGAAACCCTCCATACTGGGAGGACCCTGCCACCCCTGGCTCTTCATAGAGGAGGCAGccagtagagaggtggagagggacttTAACTCGGTCTACTCCAGACTGGTGCTGTGTAAGACGTACAGattAGACGAGGATGGCAAGGTTCTCACACCAGAGGAGCTGCTCTACAGAGCGGTGCAGTCTGTAAATATGAGCCACGACTCTGCACACGCTCAGATGGACGTCAAGTTCCGCTCGCTCCTCTGCGTGGGCCTCAAtGAGCAGGTGTTACACCTGTGGTTGGAGGTGTTGTGTTCCAGTATGCCTGCAGTGGAGAAGTGGTACCAGCCCTGGTCCTTCCTATGCAGCCCAGGATGGGTCCAGATCAAGTGTGAGCTCAGGGTTCTCTCAAAGTTTGCCTTCAGTCTCTCTCAGGACTGTGAGCTGCCTGCCAAGAAAgaggaGAAAGATCAGAGGCCACTGAAGGAAGGAGTCCAAGACATGTTGGTGAAGCATCATCTCTTCAGCTGGGACATCGATGGCTAGAAACACACACCCAAAGCCTGCAAAAAACTCCCCTGCCCAACACATGCTGTGTCTACCAGAGTGATCTTTCTGTTTCTTTCATATTGACTGCTATGTCagaacccactactagtgtttcCATCACTACCTCTCACTAGGAAGTATTGTAATGTTCAGACATTTGATCATCATTCTACAAACACATTGATATGCATCGTGGTTTCACTTCCTCGTCTCAACTAAACTGCATCCGAAGCCTTTCTACTGAGGATAGTACACTATAGGGGGCGCGTTCATCAAGACGCAACTTTATggaatgttcagatagaaataagCATTGTAGAACAAAGATGCttctgacatgtagaataaggaatAACATCAGCTCTATTcatggcatttctatctgcaatgtttGGCAACTTACCGTGGCCAGGTTATCATTTGAGACACCAAAAGACTTTCCATGTCTATCAACGAATTACATTTACTTTCTGAGCTTGCTAACAAATCAAAGGTCTTTTGATGTGTCTATTAAGGAAGCAATTAGTATGTAACCAAGGTTGATAGTCCTCTCTGTCACCATGGCTGTTAGTTCTTGGGTGAAGCTACTGTGTATGTTGTCCACACCAGTGTTTCTGATACTTTAGATCAGGTGCAGAAGACTAGGAATATACAGAAAGTGCTGATTGTAGCATTCCTTAGGTACAGAGTAGTCACCTCTACTGTGCCATATGAAGTACTTCCTCAGACTCAAGGACTGGGGTGTATCACTAAGAACCAAACCGGGAGGAATGTACCTGAATTTGTCCCAGAGAAACTTGTTTTTGTTGTGAAACGTTTTGCTACAGTGGGCACTGATCTGATGTCGTAGTAGCACCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTTCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTTCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTTCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACCTACTCCTGTGTTCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGCTACCAGTACTGTAGTAGGATGTGCTGATTGAGAAGTGGAACGTACTCCTGTGTCCGTGTGTCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1352550 lncRNA upstream 45673 52659585 ~ 52659878 (+) True G1186022
TU1352542 lncRNA upstream 68974 52636288 ~ 52636577 (+) True G1186014
TU1352539 lncRNA upstream 77637 52627371 ~ 52627914 (+) True G1186011
TU1352435 lncRNA upstream 81343 52621682 ~ 52624208 (+) False G1185919
TU1353380 lncRNA downstream 27827 52759636 ~ 52759848 (+) True G1186719
TU1353387 lncRNA downstream 31854 52763663 ~ 52763909 (+) True G1186726
TU1353402 lncRNA downstream 46270 52778079 ~ 52778344 (+) True G1186741
TU1353408 lncRNA downstream 52316 52784125 ~ 52784343 (+) True G1186747
TU1353410 lncRNA downstream 59135 52790944 ~ 52791411 (+) True G1186749
LOC118938093 mRNA upstream 17457 52685863 ~ 52688094 (+) True LOC118938093
XR_002468113.2 mRNA upstream 89333 52612248 ~ 52616218 (+) False LOC110486772
XM_021558588.2 mRNA upstream 93382 52452794 ~ 52612169 (+) False LOC110486773
XR_005035768.1 mRNA upstream 260553 52443989 ~ 52444998 (+) True LOC118938557
XM_036941463.1 mRNA upstream 290975 52406177 ~ 52414576 (+) True LOC110485217
NM_001160662.1 mRNA downstream 18039 52749848 ~ 52753917 (+) True leg
XM_036941471.1 mRNA downstream 176087 52907896 ~ 53046938 (+) False LOC110539012
XM_036941470.1 mRNA downstream 176089 52907898 ~ 53046938 (+) False LOC110539012
XM_036941476.1 mRNA downstream 384463 53116272 ~ 53122404 (+) True LOC110486782
XM_036941477.1 mRNA downstream 401741 53133550 ~ 53138298 (+) True LOC110518612
TU1352390 other upstream 316355 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 349610 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 529046 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 573524 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 635936 52048143 ~ 52069615 (+) True LOC110485215
TU1353565 other downstream 272243 53004052 ~ 53022981 (+) True LOC110539012
TU1353929 other downstream 714614 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 714614 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1456758 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1456758 54188567 ~ 54194138 (+) False G1187452

Expression Profile