RNA id: XR_005035593.1


Basic Information

Item Value
RNA id XR_005035593.1
length 5430
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110486776
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52730378 ~ 52741555 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCATCGTTGGCTGCACACGAGCCGAATATAAGCCCAAATTCCATACCAGTCCTCGCAGACGCTCTGATGCCCGCGAGCATTTTCGCTCCGGATGGAGGAGGTTGTGGAGATCATGACGCCGGGGAAGAGTGCCTCGAGGACGGCGACCTCTTCAACGGCGAGACCGGGGATCTCGGTATTGACTTCACTAGCAAGGTGGCCCTGGTCAGCCCTAATGGAGAGCAGTATGACTCGTTACTACGACAACTCCGGGAGAGGATGGACGAGGGTTGTGGGGAGACCATCTACGTTGTTGGGATGGGCTCAGACGGAGGTGACTATGGTCTGGATGAGGGAGACATGGAGGCGTCTGTAGCCACAGTTCAGTCCCTGTGTGAGCAGACCGAGTCAGAGCTGATCCTGCTGAGGGAGCGTATCGAAGCTGGGGGGCAGGTACGCGACTACCTCATCCGCCGACGCGTGGGTGATCAAGACTTCTTGGAGGTCAGgGTAGCAGTGGTGGGTAACGTGGATGCAGGTAAGAGCACCCTGCTGGGGGTGTTGACCCACGGGGAACTGGACAACGGCAGGGGGTTCGCCCGCCAGAAACTCTTCAGGCACAAACACGAAATGGAGAGTGGCAGGACCAGCAGTGTGGGGAATGACATCCTGGGCTTCGACCAGAAGGGACAGGTGGTGAATAAGCCAGACAGCCATGGTGGCAGTCTAGACTGGACTAAGATCTGTGAGAGGTCCTCTAAGGTCATCACCTTCATAGACCTAGCTGGACATGAGAAGTATCTCAAGACCACAGTGTTTGGAATGACTGGACACCTGCCTGACTTCTGCATGCTCATGgTGGGCAGTAATGCAGGTATTGTAGGGATGACTAAGGAGCATCTAGGTCTGGCCCTGGCCCTCAATGTGCCTGTGTTCGTAGTGGTCACCAAGATAGACATGTGTCCTGCCAACATCCTACAAGAGACGTTAAAGCTGCTCCAGAGGTTACTAAAGTCCCCAGGCTGCAGAAAGATccctgttctggtccaaaacaAAGATGACGTCATCGTCACAGCCTCCAACTTCAGCTCTGAGAGgatgTGTCCAATCTTCCAGATCTCCAATGTGACAGGAGAGAACATGGACCTGCTGAAGATGTTCCTCAACCTGCTGTCTTCTAAAACCTCCTACAGAGAAGACGAACCTGCAGAGTTCCAGATAGATGACACCTACTCAGTACCGGGTGTAGGCACAGTCGTTTCAGGGACTACTTTACGTGGATTGATACGTCTGAATGACACAATGTTGTTAGGCCCAGACCCACTGGGCAGTTTCCTCCCCATTGCAGTCAAATCTATCCACAGGAAGAGGATGCCAGTCAAGGAGGTGAGAGGTGGACAGACTGCCTCCTTCGCCCTCAAAAAGATCAAGCGTTCATCCATAAGGAAAGGCATGGTGATGGTGTCCCCCAGGTTAAACCCACAGGCATCATGGGAATTTATGGCTGAGATTCTGGTTCTGCACCACCCAACTACGATATCACCCCGCTACCAGGCCatggTGCACTGTGGCAGCATCAGGCAGACAGCCACTATCCTGACCATGAACAGAGACTGTCTACGAACAGGGGACAAGGCATCGGTCCACTTCCGCTTCATCAAGACCCCCGAGTACCTCCACACAGACCAGAGACTGGTGTTCAGAGAGGGACGCACCAAGGCTGTGGGCACCATCACCAAGCTGCTGCAGTCGACCAATAATATGCCGTCAAACTTCAAACCCCCGCAAATCAAAATGCAGTCTACGAAAAAGGCCCCGTACCGCAGAGAGGATGGAACCACGCCTGCCAATGAGGACGAAGCGAGCACAGCCCGACCAGACAGTCCGCACCAATCACAACaactgacagagggggaggatgaCCCTCAGAGTAATGAGGGAAACAAAGAGAGCAAGACAAAGTCaggaggagggagcaggagaCGAGGAGGACAGAGACATAAAGGCAAAtcaaaccagagcagctccacCACAGCAGCCCCGTCATCAGCAGGCACAGGAGGTTCCTAAACGACACCCCTCTCAGCCCCCAAACTACAGTACTTCCTCCATCCACCTGTTTCAGCAGACAACTACCCCCCCTTCCCAAAACTACTCCACTACAAACCCCTGTCAAAAAAAATGGGGTCATAAAATGTCCCTTTCCCAACCCCTCTCCCTCTATACCACCCATCTATCTATCGCCTTATCTTATCTTGTCTTTATCACTCACACCAGAGAAAGTCTAGGTGAAAAGCAGCTCCCAGCTCTGTGCTTGTAGATGGTTACCTCTGCCTCCTCACTCTCCTCATCTTATCTCTGATTAGTTTAGAAAGCATCCTTATATTTACAGTATATGAACCTGATATGCCTTCTTTCATTGGGTCTACGGTGAGAATCACTGTAATACTGTGTATAGTTAATCATGGGCCCGAAGCCACATGGGCAGCTATTCCCTTACAGTAGAGTAACCCAGCTCCATGCACTATAGCTCATTGTTTCACTGTTTAGCAGGCATACTAGTTACTCTCATTTCCTATTTACCACTAGAATCCCCCAATATGACATAATGAAGCATGTTTTCTATTTAATTTTATACTAAAATGTGAAGATTAATGAAAGGAAGTAAGGTCACAACTGACATAGTGAATGGTACATTTTAGTGGGCCTTCATTATGAGTGAAATATTGTAGATAAGATGTTTAATTGGCCATTTATGACCGAAAGGAAAGCCAGGGTTTGTCTGACTATCATCACACCCTTTCTCAAGTCCGTCCTCCATGGCCCAGAAAGGGATTGAGTGTTTGTGGGTGAAATGGAAAAATATCCTCCTCTCCTCGATAGCCACCTTTCATGGAGGACAGTCATGTGTATCTTCCTCTTTGAAGAGTTTACAACTATACTACACCCCTGTGAATCAGCTGTTGTCTAAATAAATGTAAATGCATTTCACTTTACACTTATTTTGGGATCACACCTGTAATTTTCCTGAGCAGAGGAGTCGTCATTTATCCACGTTCGTCATTTTTCAGGAGGCGAGAGGAGTTGAAGGCAACTTGTCCTGTCTAAAATGATTCCATTTACACTGAAAATAAGGTTTATTTAAGAATATAATGTACACTTGATTAGCAACTGTTTAAGTGAGACATTGATTGTAATAATAGTTGCAGTGCTGTTTGGACCATCACTGTTTACATAGTTGTGGAATTCTGTTTGCTTCTGACATTCACCAATAAAAACAGGCTTTATTGATCTCTGATTGGTCAACTGTTGTACATGAAATGAATTTATATTTAAACAGTGAAAACTATAGGCATAGGGGTTGAAATTAGGGTTAACGTTGTGTATAGTTTCAGTGAGGTTAGTGAGTCTGAACTGATACCATTTGTCTGTGCAGTATGACAGAAGTCTATAGGTACGGTAGCATTGCTACGGGTTAAGATGAGGGGAATGAATACAAGTTACTGGGATAGTATACCACCATTTTCTGATGGTTAAATACACTACCTTTCATTTAATATCAGAGCACAGCAGGGAGATTGAGTTTATTTTCTtatgtatatagtgtaatatTACTGCAAGGTGATGTGAGTCAAGTGGCTTTTCTTCAGTAATTACACACCAAGATGGAGGTTAGTTCGATGGCGGATGGACACATCCATTGTAATATAAAGAAATTAACTGAAATAAAAGTTTACATAGTTCTTCCCAGTCAGCAAAGTGACTACTACAGATACACTGTTTAGTAGCCCACAACGGAGAGCCATGTTGGCACTAAACATTTGGAGACAATAGTGGATGGAATGCAGAGTAGAATGGGATTGTTGGGTACCAACACAGATCGACAGCGTGGTTGGAGTAGGTTCCACTTCTCAATCAGCACCTCCTACTACAATACTGGTAGCAGGACACACGAACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGAACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGAACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGAACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTAGGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGAGTACGTTCCACTTCTCAATCAGCACATCCTACTACAGTACTGGTAGCAGGACACACGGACACAGGTGCTACTACGACATCAGATCAGTGCCCACTGTAGCAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353317 lncRNA downstream 72088 52658015 ~ 52658290 (-) True G1186669
TU1353312 lncRNA downstream 80964 52649146 ~ 52649414 (-) True G1186664
TU1353309 lncRNA downstream 85781 52644374 ~ 52644597 (-) True G1186661
TU1353306 lncRNA downstream 94789 52635287 ~ 52635589 (-) True G1186658
TU1353304 lncRNA downstream 98745 52631415 ~ 52631633 (-) True G1186656
TU1353328 lncRNA upstream 8375 52749651 ~ 52753876 (-) False G1186675
TU1353329 lncRNA upstream 8375 52749651 ~ 52753876 (-) True G1186675
TU1353397 lncRNA upstream 30539 52771815 ~ 52772021 (-) True G1186736
TU1353493 lncRNA upstream 35471 52776747 ~ 52777022 (-) True G1186820
TU1353499 lncRNA upstream 52324 52793600 ~ 52866860 (-) True G1186826
XM_036941458.1 mRNA downstream 300344 52415319 ~ 52430034 (-) False LOC110486769
XM_036941459.1 mRNA downstream 300344 52415319 ~ 52430034 (-) False LOC110486769
XM_036941460.1 mRNA downstream 300344 52415319 ~ 52430034 (-) False LOC110486769
XM_036941461.1 mRNA downstream 300344 52415319 ~ 52430034 (-) True LOC110486769
XM_036939765.1 mRNA downstream 398802 52155640 ~ 52331576 (-) False LOC110485216
XM_036941473.1 mRNA upstream 352390 53093666 ~ 53107917 (-) False LOC110485222
XM_036941475.1 mRNA upstream 352390 53093666 ~ 53107917 (-) False LOC110485222
XM_036941472.1 mRNA upstream 352390 53093666 ~ 53107919 (-) False LOC110485222
XM_036941474.1 mRNA upstream 352390 53093666 ~ 53107919 (-) True LOC110485222
XM_036941478.1 mRNA upstream 505118 53246394 ~ 53250376 (-) True LOC110538731
TU1353318 other downstream 70569 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 699718 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 701404 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 719167 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1240137 51489777 ~ 51490241 (-) True G1186154
TU1354707 other upstream 865748 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 1065368 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1707607 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1724257 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 1858125 54599401 ~ 54600449 (-) True G1188186

Expression Profile