RNA id: XM_036941470.1


Basic Information

Item Value
RNA id XM_036941470.1
length 9839
RNA type mRNA
GC content 0.53
exon number 35
gene id LOC110539012
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 52907896 ~ 53046938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacagacagacacagacagacagacagacagatatagtgTCTGAGTGCAGCTGGCTTCGAGCCAGAGACAGTTTTGTTttacatcccctctcccctccctccggcACCAGTCTGTTAATCCCTTTCATTTACAAGCACCACTCAGCATCACCCAGTGCAGCTCTacctgtgagtgtgtctgtgtatcaTATGATGAAAGCCTTTCACTATTTGTATGTGCGTGGGGGTGCGCGCGCATACGTTCGTGTGTGAATGTGCCTACTGTATGTTTGCTTATTTGCGAGTATGATATGCTATTGCctttcagtatgtgtgtgtactgtccctGGTTGTCCACTGTGTTTCTTAACCCTTTGCTGTCCATACGTGGTTCGAGAGGATCAGTATCATGGTGATTCTGCTCAACTGTGTCACCCTGGGGATGTACCAGCCCTGTGAGAACATCGACTGCACTTCAGACCGCTGCCAGAtactacaggcgtTCGATGCGTTCATCTACATCTTCTTTGCGTTGGAGATGGTGGTGAAGATGGTGGCGCTGGGAATCTTCGGGAGACGCTGTTACCTTGGCGACACCTGGAACAGACTAGACTTCTTCATCGTCATGTCTGGGATGGTGGAGTACTCGTTGGACCTGCAGAACATCAACCTCTCAGCCATTAGGACAGTCAGGGTCCTCAGACCCCTCAAAGCCATCAACAGAGTACCCAGTATGCGTATCCTGGTGAATCTCCTCCTGGACACACTGCCCATGCTGGGAAACGTCCTCCTGCTTTGTTTCTTCGTCTTCTTCATCTTTGGCATCATCGGAGTGCAGCTGTGGGCGGGATTACTGAGGAACCGATGCTACCTCGAAGAAAACTTCACCCTTTCGTCAGGTCTGACCCTACCCGCCCCTTACTACCAGCCGGAGGAGGATGACGAGCGCCCCTTCATCTGCTCTCTGGCCCAGGATAACGGGATCATGTCGTGTGGTGACGTCCCGGCccggagggaggggggaaggacctgctgtctggacagggaggATGCCTACCACCGCCAGTCCCTGGGGCTCATCCCTGAACCACTAGTCAACAGTTCAGCCAGTGCAGTGGGTCTCTGTATCAACTGGAACCAGTACTATACTAGATGCCATACTGGACATAACAATCCACATAAGGGGGCGATCAACTTCGATAACATCGTATACGCCTGGATTGTTATCTTCCAGGTGATCACCCTGGAAGGCTGGGTAGAGATCATGTACTATGTAATGGATGCTCACTCCTTCTACAACTTCATCTACTTCATCTTCCTCATCATCATTGGCTCGTTCTTCATGATCAACCTATGTCTGGTGGTCATCGCCACCCAGTTCAGTGAGACCAAGCAGCGCGAGCACCAGCTGATGCAGGAGCAGCGGGCCCAGTGCCTGTCCTCCTCTACCCTGGCCAGCCTGCATGAACCGGGGGACTGCTACGAAGAGCTCTTCCAGCTGGTCTGCCACATGCTGCGCAAGGCCCGCAGGAGGTCTGTAGCCCTGTATAACCAACTGAGAGGAAGGCCTCTGCCACCACCGCCCactagagggagaggaagaggaggaggaagaggaggaggggaaggaggagggagtgcGAACGGAGGGGAAAGGCATCACCTGAGGCAGCCACGCCAAACTCCCTGTCCTCACCAAAGCAAGCTGGACCCAGTCCACAGCTCCCAACCCCTGGGCAACTCCATCGCCCTGGCCGTCCCTCAAAACACAGAGGACTGCCCTCAGTGCGCTGCGGCACTGTCACTCAGGGAGGGGGCGGGAGCTGTGGGTGACTCGGCcaatggggaggaggagggggctgtGGAGGAGACGGACAGGGAGGAGAACCACTTGGAGGAGAAAgcagaagagggggagggagtgaagaagaagaggaggtcgTGTTTTGGACACTGTAAGGACATGTGGGATGAGATGAGGAAGAAACTTTGGGGCATCGTGGAGAGCAAATACTTCAATAGAGGAATCATGATCGCTATTCTCATCAATACTATCAGCATGGGGATAgaacatcacaaccagCCGGAGGAGCTGACTAACGTGTTGGAGATCAGTAACATTGTGTTCACCAGTATGTTCACCCTGGAAATGATCCTCAAGCTGACCGCCTTTGGCTTCTTCGCCTACCTGAGGAACCCCTACAACATCTTCGACggcatcatcgtcatcatcagtgtgtgtgagatCATAGGTCAGTCTGATGGAGGTCTGTCTGTCCTGAGGACCTTCAGACTATTGAGGGTGATCAAGCTGGTGCGCTTCATGCCAGCGCTACGCAGACAGCTGGTGGTGCTGATGAAGACCATGGACAACGTGGCCACCTTCTGCATGCTCCTCATGCTTTTCATATTCATCTTCAGCATCCTGGGGATGCATATCTTTGGCTGTAAGTTCAGTCTGAAGACAGAGACTGGAGACACTGTTCCTGACAGGAAGAACTTTGACTCTCTACTGTGGGCCATTGTCACTGTGTTTCAGATTCTGACTCAGGAAGACTGGAACATGGTGCTGTATAATGGAATGGCCTCCACCTCTCCCTGTGCTGCTCTCTACTTTGTGGCTCTAATGACCTTTGGCAACTACGTCCTCTTCAACCTGCTGGTGGCCATCTTGGTAGAGGGCTTTCAGGCTGAGGGGGATGCCAACCGGTCGTACTCCGAAGACGACAGGTCCTCATGTAACTTTGACGAGAACTCTGACAAGCTGAAggactctcttcatctctctgaccctAAGATCTGCACCCTAACCCCCAACGGTCACCTGGACTTGTCCCCAACGCCCACGGGTCTGTACACGGCCGACAGGCTCACTTTCGCTCTGGGCTCACGCAAAAACAGTGTCATCTCTCTGGGCAGGGCTAACCTGGAGGGCAGGGCTAACCTGGAGGGCAGGGCTCTGtgtcGGGGGAGCAGCTCCCTGTACCACAACTGGGGCCGTCCTGCCTCCCAGACCCAGGCAATGTGGGGCCGGCGGTCCAGCTGGAACAGCCTGGGTCGCCCCTCCCAAGCCTTGGGCCTGGGATTGGGGGTAGGAGGAGGGGGTAGCCTGCGCTCCCGCAGCCCCCACGCCACCCACCCGGCCGAGCAGgagtccctcctctccccccctcaccCTCCTCCGCACCtcacccaccctcctcccctcctggcCCTAAACTTTGTCCCGCGGCGGGACCGCCGGGCGCTGTCCTTGGAGCTGCCGGAGCTCCTCCAGGTCCCGGGGACCCCCCTGGCATCAATGCTGCCTTACCCCAGGAAGAAGAGCTTCTCCAGTGGGTTGGTTGGTGGAGGGACTGGGGGGGAGCACCAGGACTGCAATGGGAAGGCCCCATCAGCCCAGCTCCAGCTTCAACTTCAGCTACcgccacatccacatccacatccacatccacagcTACTGACAGAGGTGTTCCCTCAGGTCAACACACGCAAGGACAGAGAGGACCTGGACGATGACATCGACTATAGTCTGTGTTTCCGTATCCAGAAGATGATGGAGGTGTACAGGCCAGAGTGGTGTGAGACCAGAGAGGACTggtctgtcttcctcttctctcctcagaacaggtTCAGGCGGGTATGCCAGTCCATCATAGCCTACAAGATGTTTGACTATGTGGTGCTAGCGTTCATCTTCTCCAACTGCATCACCGTGGCTCTGGAGAGACCCAAGATCATGCAGGGCAGCCTGGAAAGAGTCTTCCTAACCATCTCCAACTACGTCTTCACAGCCATCTTTGTAGCAGAGATGACGCTCAAGGTGGTGTCTATGGGCCTGTATATAGGGGAACAGGCATATCTGAAAAGCAGCTGGAACGTGTTGGACGGCTTCCTGGTCTTTGTGTCGTTGATTGACATTGTGGTGTCAATGGCGGGCGGGGCTAAGATTCTGGGGGTGCTGAGGGTTCTCAGATTGCTCCGTACACTGCGCCCCCTCAGGGTGATCAGTCGAGCCCCAGGTCTGAAGCTGGTAGTGGAGACTCTAATAACGTCTCTGAAACCTATAGGAAACATTGTCCTTATCTGCTGTGCTTTCTTCATCATATTTGGTATCCTGGGGGTTCAGCTGTTCAAAGGGAAGTTCTTCTACTGCTTTGGCCCCGACGTCAAGAACATCACCAACAAGTCTGACTGTCTGCAGGCCAACTACAAATGGGTTCATCACAAGTACAACTTTGACAACCTGGGACAGGCTCTGATGTCCCTGTTTGTGCTGGCTTCAAAGGACGGTTGGGTCAACATCATGTACCATGGCCTGGATGCTGTAGGGGTGGACCAACAGCCAGTGATCAACAACAGTCCATGGATGCTCCTCTACTTCATCTCCTTCCTCCTCATCGTCAGTTTCTTCGTTCTGAACATGTTTGTGGGCGTGGTAGTGGAGAACTTCCACAAGTGCCGTCAGAACCAGGAAGTGGAAGAGGCTAAAAGGAGAGAGGATAAACGACGGAGACGcatggagaagaagaggagggATGCCCAGAAGATCCCCTACTATGCCAGCTACAGCCCCCTCCGCCTGTGGATCCACACTCTGTGTACCACCTACTACCTAGACCTCTTCATCACCTTCATCATCTGTATCAACGTCATCACCATGTCACTGGAACACTACAGCCAGCCACGAtctctggaTCTAGTATTGAAGTACTGTAACTATTTCTTCACATCCACCTTTGTACTGGAGACCCTCCTGAAGCTCACCGCCTTTGGCTTCCGACGCTTCTTTAAAGACAGGTGGAATCAGTTGGATCTGGCCATCGTGTTGCTGTCAGTGATGGGCATCACTCTGGAGGAGATCGACTACAGCGCTTCTCTCCCCATCAACCCTACCATCATACGCATCATGAGGGTGTTGAGGATCGCACGAGTTCTGAAGCTGCTGAAGATGGCTAAAGGAATGAGAGCTCTGCTGGATACGGTGGTCCAAGCTCTACCACAGGTGGGGAACCTGGGCCTGCTCTTCATGCTCCTGTTCTTCATCTACGCAGCACTGGGGGTTGAGCTGTTTGGAGAACTGGtGTGTAACGAGGACTACCCATGTGAGGGGATGAGCCGCCATGCTACCTTTGAGAACTTTGGCATGGCCTTCCTCACTCTGTTCCAGGTCTCCACTGGGGACAACTGGAATGGGATCATGAAGgACACGTTGAGGGAGTGCCCTCCGGACTACGGGCCTGACTACTCCTGCAACCCCAGCCTGCAGTTCATCTCTCCCATGTACTTTGTGTCCTTTGTGTTGACGGCCCAGTTCGTCCTGATTAACGTGGTGGTGGCGGTGTTGATGAAGCACCTGGACGACTCCAACAAGGAGGCCAAGGAGGAGGCGGAGATGGACGCTGAGATTGAGCTGGAGCTGGCCACGGGGGCCCTATGCTGCATGGGGCCGGAGGGAGTCTGTGCAGGAgggaaaaaagggggaggagcagggggaggaggtggaggaggagtggatagagggatgggaGTCCCAGGCAGTTCCTCCGGGGGGAATATACATCATCACGTGGCAACGACGCATCCAGGAACACTGCAAGATCCGAACAATCGTGATCCCTACTCTCCTGCACAGGAGAGTCAGTGGCTGGACAGTGTGTCTCTGCTGATTAAGGACTCATTTGAAGGAGAGATGCTGATGATTGACaacctctctggatctgtcttccatcactactcatctacctcttctCCTGTCTGGAAGGACTGTAAGAGCCACCCACAACTAGAGcAGATCCGGCTGGCAGAGATAGAGCAGGCATCTCTGAGGTCAGACCAAATGTCAGACAAGTCTTCGTCTCCGGCCCTACCTGATGACCTCAGCCTGGACGACCAGAGTGTCCACCAGCTGCTGGTGCGGGAGGgaaagGAGGAGAGGGGCAGTGACTCCCAGGGTTCAGAGGAGGCTGGCGGAAGAGGGGACTCCTTGACCCAGGCCCAGACAGGGGGGTCGAGGCACTGCAGGGCCCACAGTTCAGTAGCCGAGGAgggggctccactcctggtggagGTGGGGGTCCATCAGAGACACAAGACCCCATCCCACCACAGCCCTGgtggCACCTCCTGCAGTAGCACTAAGGCAGGAGAAGGAtcagatgagggaggaagaggaggaggaagagtaggggcGGCCAGTGCCTCTGGTTCTCCTGCTCTTATCCGTCTGCCAGCGGAGTTCTTCCACCCCGTGGCAGCAGCGGCCCTGCCGGCGCCCCCCAGGGCCAGAGTAGGGCGGCCCTCACGGGGCCTCAGACTCACCTCCCCGGCCTCCTGGTCCTCCCTGCGCTCCCAAGGAGCCCACAGCCGGGTGCTCTGCACGCAGTGCCCGTCCCATAGTGACTCGTCTCTGGCCAAGGGGAGCTCCGATGGCAGCCTCCAGACCACCCTAGAGGAAGGACTCAGCTTCAGTGTTTCGCCCCCTCAAGACCTGgtgtcccccctccctcctctacccctgctCTGCCCCCTGCTCCCTGAGGACCCCACCAGCTGCCCAGCAGGCCAGACTCTGAGACCGCGGCCCAGCCCCTCGTCAGGCCCTGCCCTCACCCTCCAGGCCACTCGGGGCCACCAGCGGAGCCAGAGCAGCGGCAGGGGTAGCATCAGCCCCGGCTACACCCGGGAAGACTCCATGGACCCCGTTCCATGTGACCTGGAGGACCTGGGCATCGGGATCAGTTTGTCTATCGGGGGGTGTGGCTCCAGCCAGGCGGGCAACAGCGAACACTTGTCGGAGACGCTAAGCAGTCTGTCGCTCACATCGTTGCTCTCGCCCGCCTCCCTGGCACCCCCGGGGGTGAAGAAATGCAACAGCACTGGGAGCTTGAATCAGAGggcgaggaggggggaggggagacagatcCTAGGGTTGGAGTTGGACCACCAGGGCTTCCTGGCCAACCcttggggagagagtgggggaggcagaggagaggagggacagttGGGAGAGGCGCCGGACCTCAAGGGGAAAAGCTCAAGCCAAACAACAGTAGGGTCCTGTAGTAAAAACAGATGAAGCCTGAATCCCTTGTTGTCTACTACAGCTCCTATTAGGATTCATCAACCCCTTACTGTTCCTCTCCGTCCCCCTCAGGCAGAGAGAAGTTTGACGTTTTTGACAACGTGTGATGTAATCCAGTGAATTCCTATAACCaaacccctccctctcgctctataAATATTTGTTTATGACCCCCCCCCTGTCCCATTTTGTGCTACCCTGTGGCAGTGGTTCAGGTGTGGAGGGTCAGAGATCAAACGGTGGAAGGTTAAAGGGGATTACAGGTGTGACACCTGTGGTGGGGGTGTGGGGGGCTGGGATGGACCCCCCATCATACCCCTGTGGAGGAGAAGGACCCCCAGAGGTGGAGACAGACCAGGAGGGCTGCATCATCATATCAGGGAGATATACATAGAAGATGTAGCCAGAGACAAGCTGAGACAGAGATGTAACGAGAACATTTTGTCTGAACGTCGTTCCTGTTTTCCTGTTTGTTTTCATTTTTTCTTCGGCTTCACAGAAGTTTAAAATGCAAAAATAGAATATCTAACAAAACTGAGCTGATCAAGCCAacagatttgatttatttttcgGTGTGGCTGTAAATCACAGTGTAGTAGGAGGCTGTATGTACGTTGCAGTGTAGAATGAGCCTGAATGTACGTCACGGTGTAGGAGGGCTGAAGCCAGATCTGTTGTGGTAGACGGAGGCTACAGGTCCTTGTGTGTGGAGtggaagaggggtgaggaggtcTAGGTTGAACAGAGGTAGTGTAGAGGTCACCTGAGAAGGAGTTGTTATAGTGGAAGAGCTGAGACTTAGGTAGCAAAAGCATGCGTTAActtatcatcaccatcacctaACCCCTTCCCTCCATCGGTACTTTTCacgaaggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgggtgtgtgtgtgtgtgatagtacaacaggaaaaagagagacagagagatagagaccatACTAAGATCCCACTCCTGCATGCAACAGTTTGTGAAATAGGCTCTTTTATCCCAACGTCACTCACtcagagagaaggacagggagtgaatgagagagacaggacagcCTGCTATATCCACTCACAGTAGCAAAGCATCTCTGTCAAAGACACTGACCCTCTTGAGACAAACAACCTGAGGAGACGAGACGAGCACCATTCACTCTGGGAGATGAAAACTTCACACCTGCATACAGTTGCTTCACAATGGAAGGTGTGTGAAATTCAAACCTGTCACTTCTTTCTCTTTGTCACTTTGCCAAAGTAAGAAAGGAAGAATATATCCGAGATATGAATTCCAGACCAATAGAACCTCCTAGAAGATGGAGGCGGTTTGCCTGCATGATGGAATTATTGCATTTTACCCAAGAGTTTTAATATATATACCGAAGTGTATCAAGATGTCAATGTTGAGATGATAATTATAAAGTGGTTTCTATTCCAATATTTTTTTAGAATACAGAATAGGAGCGTGACAGTGTTGTCATGACTTTGTCCTTAACCTATACCTTACCCGTACGATTTCTCGTATAACTTATTGTCGAAAACCATTTGTCTGCAAGTGGCTTTCAGTTTTATAATGTGGGGTTAAAAATATATCATTTTTATTATTAAAAGTGTGTGGAGAGAACAACcaagcaaaaaaatgtaaataagctCTGTGCGCTGAAGAAAAAGTTCCCTTGGGGACACGTAACTTTGGGAATTTCGGTTCCTCCTGGAATTTTGGATTTTGGAATCCCAAATGAAGACCAAAGGAGGGAAGGGCCATAATTTCGCAGCACAGGAGAACATTTCCTAATCACAGACATTCCCGGGACGAACAGGGAACGTTGTCGCTTAGCTTAGCCTCCTATGCTAACACCAAGATGAAAAAACATTGCTGATCTTTTTGAAAGCTTTAATTTGAGTGTCATACCAATACATGATGACATATCTAATTATTGACACATCAATGTTCCTTAGCATGGTTATGGGATTGCAATAGGATGCTTCTCCTTGTTTAAAAGATACGCAATTCACtcaccccctctatctctctctctaacacacatctGTAGTAGCAAACCCTAGTTTTGATATCAAGCTGTCACTGTAACGATGAATAAACATTGCATCTTTTCCCAACCTTTTGGTATGCCACTCAGTACATCTGAGATGAAGTGGCCATCTTAGCCTGACCTAGAATACACTTTTGTATCCCTGGTGgggttttttggggggagggttCTCATTGAGGTGATGAGCAAAGTTCGGTTTGACCTGTTTAATGAACTTCATTGAAATTTAATTGAATCACTGGTGATTGTCTTTAACATGTTTGGAACATGTGGGATATCAGTGAGTGATTATTGCTATGGGTTGTCTGTTACTGTAACTTCAGGAGATGCCACTTTATTATTATAGTCCACACCTGGACCGTCTTGGTTAATGGTGGTGGGAATAGGTAGAAGCTGCCCCTAACCACTGATACAAGGTCAGATATTAGTTCATCCCCTTAATCTTTAAGGTTAGAATAAAGGGTTGGGTaatctgattctagatctgtggttaggggcGACCTCAACCTCCAGGTGTAAAACATGAGCGTGTGGGTTGACAGGAACCATAACGTGACCTTGAAGGGCTGTTTTAGCTTCAAAGATGTTCTCATAAATGACCAGATAAATCTCTAAGTCAATGACTATGGCATCAAAGGTAAGCCTAACGGCACAGCAATAAATGTTCTTATGTGTTTGCCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353434 lncRNA upstream 75762 52830635 ~ 52832136 (+) True G1186767
TU1353410 lncRNA upstream 116487 52790944 ~ 52791411 (+) True G1186749
TU1353408 lncRNA upstream 123555 52784125 ~ 52784343 (+) True G1186747
TU1353402 lncRNA upstream 129554 52778079 ~ 52778344 (+) True G1186741
TU1353387 lncRNA upstream 143989 52763663 ~ 52763909 (+) True G1186726
TU1353608 lncRNA downstream 36559 53083497 ~ 53083827 (+) True G1186924
TU1353576 lncRNA downstream 46734 53093672 ~ 53094918 (+) False G1186896
TU1353577 lncRNA downstream 46734 53093672 ~ 53096190 (+) True G1186896
TU1353772 lncRNA downstream 123174 53170112 ~ 53184821 (+) True G1187043
TU1353784 lncRNA downstream 140628 53187566 ~ 53194540 (+) True G1187054
NM_001160662.1 mRNA upstream 153981 52749848 ~ 52753917 (+) True leg
XM_036941464.1 mRNA upstream 176089 52705551 ~ 52731809 (+) False LOC110486774
XM_036941476.1 mRNA downstream 69334 53116272 ~ 53122404 (+) True LOC110486782
XM_036941477.1 mRNA downstream 86612 53133550 ~ 53138298 (+) True LOC110518612
XR_005035596.1 mRNA downstream 181202 53228140 ~ 53228911 (+) False LOC118938324
XR_005035597.1 mRNA downstream 181202 53228140 ~ 53245488 (+) True LOC118938324
XM_036941493.1 mRNA downstream 398397 53445335 ~ 53447012 (+) False LOC110538743
TU1352390 other upstream 518702 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 551957 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 731393 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 775871 52121577 ~ 52132027 (+) True LOC110486764
TU1351964 other upstream 838283 52048143 ~ 52069615 (+) True LOC110485215
TU1353929 other downstream 399485 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 399485 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 1141629 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 1141629 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 1217128 54264066 ~ 54265028 (+) True G1187390

Expression Profile