RNA id: XM_036941475.1


Basic Information

Item Value
RNA id XM_036941475.1
length 2301
RNA type mRNA
GC content 0.53
exon number 10
gene id LOC110485222
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53093666 ~ 53107919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGGGCTAGTGGGGGAACAAGAGTGGATGTTACAGGACATCCTAGCAGAGGGTGGCGTAATTTCTCATACAGCGGCGGGTTCAGGTTCCGCACACGGATGCACAGTGGGTAGCGACTGTTGCTGAATGCGAACGGCTGCCATTTTGATCTGAAATAACTAGGATCTGTGTTTCTTTGGCGCAATAATAAATGGTTTAACTTAGTAGATACAATAGCTTTTTGCTTTCAGTTTTGACGCAAAATGCTTTCCGCAGCCCAGTTACTCGATGAGTTGATGGGTCGAGACAGAAACTTGGCCCCCGACGAGAAACGATGCAACGTACGCTGGGACCACGAGACCACCTGTAAGTACTATCTCTGTGGATTCTGCCCTGCAGAATTATTCACAAACACCCGGTCTGACTTGGGTCCCTGTGAAAAAATCCACGATGAAAACCTTAGGAAAATGTATGAGAAGAGCTCCCGGTTCATGAAGGAGGGCTATGAGAGGGACTTTCTGCGCTACCTGCAGTCTCTCCTGGccgaggtggagaggaggatccgCAGGGGCCACGCCCGTCTAGCCCTGTCGCAGGCCCAGCAGGCCGCAGGAGGGCCTGGTGGTCCTGTGGGGAAGAACGAGGAGAAAGCTACAGTCCTGACAGAGAAGATCGAGGACCTAGTCATGCAGATCGAGGAGTTGGGCTCTGAGGGCAGAGTGGAGGAGGCCCAGGGGATGATGAAACTGGTGGAACAGCTAAAGGATGAGCGAGAGCTGCTCAGCTCCACCCCCTCGACGATTGAGACCTTTGCGGCCCAGGAGAAACAGATGGAGGTGTGTGAGGTGTGCGGGGCGTTCCTCATTGTGGGAGACGCCCAGTCCCGGGTGGATGACCACCTGATGGGCAAGCAGCACATGGGCTACGCCAAGATCAAATCCACTGTGGAGGAGCTCAAGAAGTTGAATCGGCGATCCGAAGACCCCGCCGGAGAAGACAAGGGAGAGCTAGAAAGCAAGGACTGGGAgcgtgagagggaggagagggagactaaGCGCAagttggaagaggaggagaaagagaaggagaaggagaaagagcgcgagaaggagaaggagaaagagagggagcgagtgaaggagcgggagagagagagggagcgagagagggagaagagaggaaggaggagccaCTCGAATAGCCGCCACTCCAGCCGGGCGTCGGACCGTAAGAGGAGTCGTTCCCGGGAACGCCGGCGGTCCAGGAGCAAGGAGAGGGAGCGCAAACGtagcagAAGCCGGGACAGGGACCGGGAGAGGCGGCGCAGCCGGGAGCGTTCGGACAGGAAACGGCGCTCCCGCAGCCGGGAGAGGAAGAGGTCCCGCAGCTCGGAGCGCAAGTCTCACCGCCACCGGAGCCGCAGCCGGGACAAGGACAGGACGTCCAGAGACAAAGagCGTAAGGAgccggaggagaggagaagcagCTCCAAGAAGGATGAGGTGTTAGAGGATGACAAGCCTTCCTCTGACGTGGCCAAGCCTGGGCCCGTGGAGGCTGAGGCTCCTGCCTCCACTCTGGGCCTGGCCCTTCTGGCCAGGGTCAACGGGGCTGCTCAAGACGAACTCCATTCTGAAGGTGACACTCAGTCCAATTAAAACTGATCTGATAGGACCTCAGATCAGGCTCAGGGGACGCTGGGAAATCTGGAGGAGGAAGATCTGAAGACCACCTGTCGCTCCACCCTGAACCTGTCTCTGCGCTGCTTAAAACAAGGTGAACCACAGATGTAGTGGCTTATTAAAACAACTGTGACATCTAAATCACAACAAAAGACACGTGTGTAAAGGTGCCCTCTGTTGTCCTCCTGTTGTTTTTTTTGGAAGATCACATTTTTAGCGCAGGACCAGACATTCTTCATTCAGTTTTCCGTTGTATTTCTTTCCTTCATCGTTTCTGATATAAAGGACCTTGTCTAGTAGCTGCTGAAGTAGAATGGTACATTAAGGCTTTTATCTATGTTCTGTTGCTCATGCAGTTTTTAGGACAAATAAAAACCGTGCTTGTTTTGGTTTGTAATGTCAGGTTTCCACTCTTTCACGGTTTGACTTTTTTGGGGAAATCAGTTTGGGAAGTGTTTGTACAATGTTAGTTAGgagcatctctttctctcctctctccttcccacccACCAGATCTCACACCCACTGACTGATCTCTCTAGCCCCTTACTGTAAAATATAGTGAGATTTGAATTGATCTTTTTTTGTTCTGATTTTTAAACCTGTTCATCTTGATCAATAAAAAGAGagcttgaatgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353703 lncRNA downstream 46730 53043502 ~ 53046936 (-) True G1186993
TU1353676 lncRNA downstream 78389 53012004 ~ 53015277 (-) True G1186972
TU1353674 lncRNA downstream 90537 53002908 ~ 53003129 (-) True G1186970
TU1353673 lncRNA downstream 91567 53001849 ~ 53002099 (-) True G1186969
TU1353666 lncRNA downstream 98124 52994626 ~ 52995542 (-) True G1186966
TU1353744 lncRNA upstream 12014 53119931 ~ 53122643 (-) False G1187023
TU1353746 lncRNA upstream 12014 53119931 ~ 53122643 (-) False G1187023
TU1353749 lncRNA upstream 12014 53119931 ~ 53122809 (-) True G1187023
TU1354548 lncRNA upstream 103523 53211440 ~ 53211640 (-) True G1187704
TU1354555 lncRNA upstream 118717 53226634 ~ 53226850 (-) True G1187711
XM_036941468.1 mRNA downstream 352111 52730378 ~ 52741555 (-) True LOC110486776
XM_036941469.1 mRNA downstream 352153 52730378 ~ 52741513 (-) False LOC110486776
XR_005035593.1 mRNA downstream 352390 52730378 ~ 52741276 (-) False LOC110486776
XM_036941478.1 mRNA upstream 138477 53246394 ~ 53250376 (-) True LOC110538731
XM_036941480.1 mRNA upstream 250443 53358360 ~ 53417730 (-) False LOC110539023
XM_036941481.1 mRNA upstream 250443 53358360 ~ 53417730 (-) False LOC110539023
XM_036941482.1 mRNA upstream 250443 53358360 ~ 53417730 (-) False LOC110539023
XM_036941483.1 mRNA upstream 250443 53358360 ~ 53417730 (-) False LOC110539023
TU1353318 other downstream 433857 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1063006 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1064692 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 1082455 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1603425 51489777 ~ 51490241 (-) True G1186154
TU1354707 other upstream 499107 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 698727 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1340966 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1357616 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 1491484 54599401 ~ 54600449 (-) True G1188186

Expression Profile