RNA id: XR_005035597.1


Basic Information

Item Value
RNA id XR_005035597.1
length 1355
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC118938324
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53228140 ~ 53245488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcagcctaggCTACACCTAAATATCTGACGTGCTGTATCGGATGAAAACGAGACGatttttcagtctgatcaactgttaAAAACTGCCCCACCGCTCTGGGACCTGCACCTGTCTGCTTGCAGTTGTCAGTTATCGTCAGtcccctcctgttccctgattaAGAGGTGATGTCTACTCAActccactaccattgtcaactttctcctgacatgaactgaagtCACGTGTCATGTGCCCgctcatccactggcacattgaatgtttcccCTTCAAGCACTAATCAGAGCGGGGGTGATGACGTCCAGTGATACTAGAGCCTGTGGGGGGAGACCAGACGGACGAGGCTcaggagagcagagcagggtgATAATCCATCAAAGGCATCCCCAGAACTGCTTGTCCCCAACACACATATTTCTATTACAAGCACATGTGCACACAAATGCTCACGTAcaagtgcatgcacacacacacacacacttactgtatATCCAAAACCATCTGTGAACTTTATTAGGGCCAATCTACCAAGTGCAGCTGACAGGCAACAGTGCGCAGATACTTGGTGAGCTAACCTCCGAGGATCGTGGTATGCCACCAGGGTTAAAGTGCTCTCTGTGTACCCACCGGCATGTTAGTTCTACTTATAaattgggtggttcgagccctgaatgctgatagtctgacagccgtggtataccaGAACTTATACCAcaggtgtgacaaaacatttgattttactgttggtaaccagtttataatagcaataaggcacctcaggggtttgtggtatatggccaatataccacagctaagggctgtgtccaggcactcctcgTTGTGTTGTAcagaagaacagcccttagccatatTGGTTATAtacaccacacctcctcgggcctaaTTGCTTAATTATGACACCAGCAGCAGtggcagcaacaacaacatgagaaacagaaacagaagacAATCCATTCTGGTTGAAACCATGATACCAAGTACATGAATAGTCCCAACAGGACCTCAACATAGATCACTTTTGGAAGAATCAAACAAGCAACATACACTTCCTTTTCAGACCAGCATTAATCACATAAGAATTTCATTCTCATTCTGTTCATTCCATGAGATTCATTTTGTCATCACAAGTCAGCAATCATAGTTATCCAATGATCCGTCACCTCAGGACACTGGGTGAAAAATGATTGAGAGCATTTAGAATAGCATGCAGTTGGCCACTGTGTAGAAGCCTTTGCTGCCTCTTCAAAGTGGCTATTGTTATGCTATAGTACCCAAAATGCTCAGTAGATCCACTACaaaatcagtatagatgaagggtaGGAAATAAAAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353800 lncRNA upstream 21154 53206722 ~ 53206986 (+) True G1187069
TU1353784 lncRNA upstream 33600 53187566 ~ 53194540 (+) True G1187054
TU1353772 lncRNA upstream 43319 53170112 ~ 53184821 (+) True G1187043
TU1353577 lncRNA upstream 131950 53093672 ~ 53096190 (+) True G1186896
TU1353576 lncRNA upstream 133222 53093672 ~ 53094918 (+) False G1186896
TU1353829 lncRNA downstream 36020 53281508 ~ 53281755 (+) True G1187098
TU1353830 lncRNA downstream 37407 53282895 ~ 53283193 (+) True G1187099
TU1353831 lncRNA downstream 37934 53283422 ~ 53283798 (+) True G1187100
TU1353832 lncRNA downstream 39625 53285113 ~ 53285348 (+) True G1187101
TU1353886 lncRNA downstream 146370 53391858 ~ 53397031 (+) True G1187151
XM_036941477.1 mRNA upstream 89842 53133550 ~ 53138298 (+) True LOC110518612
XM_036941476.1 mRNA upstream 105736 53116272 ~ 53122404 (+) True LOC110486782
XM_036941471.1 mRNA upstream 181202 52907896 ~ 53046938 (+) False LOC110539012
XM_036941470.1 mRNA upstream 181202 52907898 ~ 53046938 (+) False LOC110539012
NM_001160662.1 mRNA upstream 474223 52749848 ~ 52753917 (+) True leg
XM_036941493.1 mRNA downstream 199847 53445335 ~ 53447012 (+) False LOC110538743
XM_036941494.1 mRNA downstream 199847 53445335 ~ 53447012 (+) False LOC110538743
XM_036941495.1 mRNA downstream 199847 53445335 ~ 53447012 (+) False LOC110538743
XM_036941492.1 mRNA downstream 199849 53445337 ~ 53447012 (+) False LOC110538743
XM_036941498.1 mRNA downstream 199858 53445346 ~ 53449108 (+) False LOC110538743
TU1353565 other upstream 205159 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 838944 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 872199 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 1051635 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 1096113 52121577 ~ 52132027 (+) True LOC110486764
TU1353929 other downstream 200935 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other downstream 200935 53446423 ~ 53449716 (+) True LOC110538743
TU1354243 other downstream 943079 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 943079 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 1018578 54264066 ~ 54265028 (+) True G1187390

Expression Profile