RNA id: XM_036941482.1


Basic Information

Item Value
RNA id XM_036941482.1
length 4786
RNA type mRNA
GC content 0.54
exon number 31
gene id LOC110539023
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53358360 ~ 53417730 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGGGAAAACATTATCCACGTCTATCGAAGGCTTCCAGTGAGGGACAATTACACGTATATTGCCATTTCAATTGAAGCTTTTAAAGGGAATACACATTCGATTTTCTTAAAGAAAATAACGGAATTCATAGTGGCGGGGTAAGTGTAAATCCTATTTACAGGACCTATTTGTTCAAGGAAGGGAAGAAAATGGAGTTGGAGGACGGAGTAGTGTACCAGGACGACCCGGGGACATCGGCTATGATGTCGGAGCGGGTATCGGGCCTGGCCAACTCCATCTACCGCGAGTTTGAGAAACTGATAGGAAAATACGACGAAGATGTGGTGAAAGAACTGATGCCGCTCGTCGTGGCTGTGCTGGAGAACCTGGATTCGGTGTTCGCGGAAAACCAGGAGCATGAAGTGGAGCTAGAACTGTTAAAGGAGGACAACGAACAGCTCATCACGCAGTATGAACGGGAGAAAGCGCTGAGGAAACACGCAGAGGAGAAGTTCATGGAGTTTGAGGAcagtcaggagcaggagaagaaGGACCTTCAGAACCATGTGGGCAGAATGGAGTCCCACTCCCGCCAGCTTGAGCTCAAGATCAAGAACTATGCAGACCAAAtcGGCAGGATGGAAGAGCGAGAGTCTGAGCTGAAGAAGGAGTTCAACTCACTCCATCAAAGACAcacagagatgatacataactacatggagcatgtagaGAGGATCAAGCTCCACCATATGAGTGTAGTAGAGACTTCAGACTCTGGAACTGTGGGCAGAGTCAGgAAAGAGCGTCCCATGTCTCTGGGTGTCTTCCCCATGTCAGGAGGGGGGGCAgttctgacccctgacctccagGCCAAGTCTGAGACGCCGGGCGCAGAGGCCTGGAGGTTCAACGACCTGGAACATCCGCGCTCCAATGCCAGCCTCAAGTTGGATACAGACGACCCCCCAGAGAAAAGGGATGGTTACAGTACGCTGCAGATCTCTTGGGGGAATTCTCTCCCAGACGACTGCAAGGACGAGCTGTCGGACCTTGGCTCAAAGTCGGTCACTCCCATGTCCACCACGGCCTCAGACGTCGCCATGGAGGGGGAGGGGCCAAACAGTAAGAGCATGGAGTTGCTGGCGGCACTGGGGAACAGGTCAATATCAGTGGGTTTGCCAGAGAACGAGGATAGCTCAGAGGTGCATGACATCATTGAGTCCACCCCTGAACTGGACATGGACCTCAGTGGATACAAAGCATCCAGCACCCCGACCAAAGGAGGCATTGGCATTGAGAACATGGCGTTTGACCGCAACACAGACTCTCTGTTTGCGGAGCTGTCGTCTGCAGGCATAGGGGACGTCATCGGAGACGTGGACGAGGGGGCCGACCTGCTGGGTATGGGTCGTGAGGTTGAGAACCTGATCACGGAGAACACACAACTAATGGAGACAAAGAACGCTCTGAATGTGGTGAAGAATGACCTGATAGCGCGGGTGGATGAGCTGTCGTGTGAGAAGGAAGTGTTGCAGGGGGAACTAGACGCTGTGACACAGACCAGGAAAAACctggaggagaagaacagagagctGGAGGAGGAGCTCAAGAAAGTGCgtgtggagatggaggaggtgaaaGGGAAGCCAAACGAGGAAGAGGATAGTGACGTTCCTACAGCCCAGAGGAAGAGGTTCACCAGGGTAGAGATGGCTAGAGTCCTCATGGAGAGGAACCAATacaaggagagactgatggaatTACAGGAGGCTGTTAGGTGGACAGAGATGatcagAGCCTCCAGAGAAAACCCTTCCCTGACTGAGAAGAAGAAATCCAGCATCTGGCAATTTTTCAGCCGCCTCTTTAGCCCCTCCTCCTCCAGCACGGCAGTGATGAAGAAGGCGGAGTCCCAGGGGAGGGAGGTGAAGTACATGCCCCCTGCAGGAGGGGGAATGAAGAAGAGGAGCAGCACCTTCTCCCAGTTCCCCACCGAGAAGTCCAAGGCCTTCGACTTCCTCAACGAGGAaATGGACCCGTGCGCCTCTCCGTCCCGTAGGGAGCAAAAGAGGGCCCAGTACAGACAGGTCAAAGCCCACATGCAGAAGGAGGATGGACAGGTACAGGCCCACGGATGGAGTCTACCCAGCAAATCTaagGTAGTGAACGGGGGCCCAACAGAGAACAAAGAGAAGAATCTACCTGTGCCAGTCTACCTGAGGCCCCTGGACCAGAAAGATGCTTCTATGAAGCTGTGGTGTGCTGCGGGTGTGAACCTGTCAGGAGGGAAGATCAGAGAGGGAGGGTCCATGTTGGAAGGACAGAGCAGGAAGGGCTCTGTGAGCAGCCTGGACCATTTAGAGACAGAGAACAAGGAGCAGGAGAAAGGTGaccaggagaaggagaaggagctgCGCCTGCAGGATGAGATGTCCTGCAGGGTGTggatctgtaccagtacccacTCCTCTACTAAAGTCATGGTGCTGGAGGCCAACCAGCCCTCTGACCTGCTGGACAGCTTCTACGCCTGCAACTCACACGTCCTCTGCATCGCCAGcataccagGTGTGTTGGAGACAGACTACCCTGCAGGGGAGGAGCTACCTGTACCCCAGGACCTGGAGTCCGGGCCAGTTGATGGCGTGTCATTGACAGGCAGCGTGGCCAGTCTGGGCTCCGCGGGCAGCGACGGCGCCTTGGCAACGGAAGGGACCACCGCCGTCCTCCAGATGGCCGGGGCAGGGCTCAATGACCTCCCGGCCCAGCACAGCTCAgTGGATCTGTCCAGAGAGCCCAGTCCTGCAGAGGATGGGGTCCCCACGGCGGAAGAGGCCACAGAggctacagaggagggggaggagaaccAGGGGCTGgtcgtcagtcagccaggcaTCTACACAGAACACGTGTTCACAGACCCTCTGGGAGCCGGTCACCATGAGTCCTCCACTGCAGACACACAGAGggaCCAGGATGGGGTGGGTGAGGCGTCTCTTCCCGACGACATGCTCCCTGCTGGGGAGGACGTCCAGAGGATGAGCAGCGCCCTGCCCACCATGTGGCTGGGGGCCCAGAACGGATGttTGTATGTGCACTCGTCTGTGGCTCGGTGGAGGAAGTGTCTCCACGCCATCAAGCTAAAGGACTCCATCCTCAACATAGTGCATGTGAGAGGAAGAGTCCTGGTTGCCTTGGCTGATGGCACGTTGGCTATATTCCACAGAGGCCTGGAGGGACAGTGGGATCTGACCAACTACCACCTACTAGACCTGGGCCGGCCGCACCACTCTATCCGCTGTATGACAGTGGTGCATGACAAGGTGTGGTGTGGCTACAGGAACAAGATCTACGTCATCCAACCCAGGGCCATGAGGATAGAGAAGTTGTTTGACGCCCACCCCCGGAAGGAGAGTCAGGTGCGTCAGCTGGCCTGGGTGGGAGATGGGATCTGGGTATCCATCCGCCTGGACTCCACCCTCAGACTGTTCCACGCCCACACCTACCAGCACCTCCAGGATGTCGACATAGAGCCCTACGTCTCCAAGATGCTGGgTACGGGTAAACTGGGCTTCTCCTTCGTCAGGATCACAGCCCTCATGATATCCTGTAGCCGTCTGTGGGTCGGAACAGGAAATGGTGTCATCATCTCCATCCCGCTGTCAGAAGCTATAGGTCCTCCTCAGCATGGAGTCTTACTGAGGGGCCTCAGGGCCAACAAGACAGCGGGTGCAGTGCCAAATCGCCCTGGCGGTGCCGTGCGGGTGTTCAGTGAGGAGGGCACGGAGAGCACTTTGCCAGGCAGCTTCGTGCCCTACTGTTCCATGGCACAGGCACAGCTGTGTTTCCACGGACACAGAGATGCAGTCAAGTTCTTTGCAGCCGTCCCAGGTCAGGTGATCCCGTCCCCCGGGCCCGGAGGGGATTCTGGGTCGGATGACCCCGCCTCTGAATCGTCTGACATGGCGACCTCTGAACCTGCCAAAACCTTCCTGGTCATGAGTGGAGGAGAAGGCTACATCGACTTCAgaatggGTGATGATGTAGGAGAGGTGGATGGCAGCCTATCGGAGCCCACCATGAAGCAGGCCACCCCCGCCAAACCAGAACGCAGCCACATCATCGTCTGGCAAGTCACTTCCTGCCAGGAGTGAGCCAATCACAGACTGCCACATCACTACTCGGTCGCACAACCCCCCCGCATGCCCCTCCCTTAGGTTTTAAGTTGTTATTAttgatattattattactactgtgGATGACTACATTGTTGCTAAGGATTCTTTTAGTGTCTGTTTTAAATGTATCCATGAATTTGGGGCCTAATGTTTGCCAGGTTAAAGTGAAGCAGTGAAGTCAACTCCTGATAAGTGCACATGGGATAGATAAGTGCACTCATTTTAAGTGCAGTGCACTTCACCGGGCCCTTTTCAAACCGTTGTTTTCACTTGCTCCAGATATCTGCAGCACATTCTAGAAGTCGACTGCGGTATAAAGGCAGCTCAgtgttttaaagtaactgtccagtgaaaatctcacttttagaAGTTtgtattctgttaactcatactcAAATAATATTGTTGACACTTCAAATCCTccacctcaaacttgtatctcaaacagaccgtTTCAAAAATGCTTGCTTTTCCTCATtgaggatgatgtcatcctcctgaggaggatgagctggccaatcagcggtctactcacataaatagttttaatgaccggtatatgcccacaccattctgttgttggggtaagtccacaccattctgttgttgggttaagtccacaccatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354601 lncRNA downstream 2910 53308264 ~ 53355450 (-) True G1187750
TU1354585 lncRNA downstream 71514 53286428 ~ 53286846 (-) True G1187736
TU1354584 lncRNA downstream 72430 53285703 ~ 53285930 (-) True G1187735
TU1354583 lncRNA downstream 74246 53283420 ~ 53284114 (-) True G1187734
TU1354565 lncRNA downstream 119665 53238454 ~ 53238695 (-) True G1187718
TU1354665 lncRNA upstream 25146 53442876 ~ 53443299 (-) True G1187808
TU1354678 lncRNA upstream 63969 53481699 ~ 53481969 (-) True G1187821
TU1354680 lncRNA upstream 129557 53547287 ~ 53547497 (-) True G1187823
TU1354683 lncRNA upstream 131369 53549099 ~ 53549316 (-) True G1187826
TU1354633 lncRNA upstream 275498 53693228 ~ 53697259 (-) True G1187779
XM_036941478.1 mRNA downstream 107984 53246394 ~ 53250376 (-) True LOC110538731
XM_036941472.1 mRNA downstream 250441 53093666 ~ 53107919 (-) False LOC110485222
XM_036941474.1 mRNA downstream 250441 53093666 ~ 53107919 (-) True LOC110485222
XM_036941473.1 mRNA downstream 250443 53093666 ~ 53107917 (-) False LOC110485222
XM_036941486.1 mRNA upstream 12302 53430032 ~ 53440075 (-) True LOC118938325
XM_021625707.2 mRNA upstream 32824 53450554 ~ 53456191 (-) True LOC110538745
XM_036941487.1 mRNA upstream 40781 53458511 ~ 53464014 (-) True mfsd13al
LOC118938683 mRNA upstream 65524 53483254 ~ 53483362 (-) True LOC118938683
XR_005035886.1 mRNA upstream 68056 53485786 ~ 53485904 (-) True LOC118938680
TU1353318 other downstream 698551 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1327700 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1329386 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 1347149 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 1868119 51489777 ~ 51490241 (-) True G1186154
TU1354707 other upstream 189294 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 388914 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 1031153 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 1047803 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 1181671 54599401 ~ 54600449 (-) True G1188186

Expression Profile