RNA id: TU1353930


Basic Information

Item Value
RNA id TU1353930
length 1292
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC110538743
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53445335 ~ 53450473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAACACATCAATGGGGCAGTACCTCAATGGCCACCCATTCTTAGCCCTGGCTGTGTTGGTATTTGGCTCCATGGCCACTGTACCCATTGGGATTTTCCTGACCTTTGCCACTGTTACATTCATTGGTGCCACTGTGGGTTTCGTTTTATTGGAGGtgTTTCTGCTATCCCTAGGAGGGGTCAGTCTGCTGTGTGTGCTCTCTGCTCTGgccatcctctccatcctggtCTCCTTGGTCCTTGGTGCCTGTTACATTACCTCTTACAATGTGCTCAACTTCTACTACAGCCAGCGGTATCAAAACACACAGCCTggagtaaaaacacacacacacacacagaggccctTCATTTGAGATTCTaattttctccctctttctttctctttttcaccCAGTGTCAGTAGGTGGAGCCTGCGACAAATATAACAGTCATGGAACAAGATGGAGATGAAGAAGCCTATGGAAAGGGAAGCCGGAGGTTTAAGGAGCTGCAGCGTCAGTGATGGAGATGGCCTTCTACAGACACAATCGTATACTGATCACTGCACTGCAGTCCTTTCACTGGCAGATAGGGGTTCCTCTAGACTCAAGAACTAGATAGAGTAAAACCTCAGGTTGACTTTtcattaaaggcccaatgcagctgtttttatctcaatatcaaataatttctggctaataattaagtaccttactgtgatttgttttaaatgaaaacaaacaaaaaatgcttcttagcaaagagcatgTTCTCAAGCAATAATTGTTTAGGTCTAAGTGGGGAGGGAAAAACTGAAACATATGTTATTGTCAGAGAcatttggaactctctttcttattagtCTATAAACTAATTTACCGCCAGGTGATGTCAACAGGCAGGCCACATTTTCAGTCCACCAAagcaggctgaaatttcaggtggtcttttcaaacagctcttgcaCTGAAAGGGCATCATTTTCACAATtgcacagtattattccaacatcATCGTCTGGAAATATTTATAAAACAGAAAAATCTTTGACTGGGCCTTAAACTAGAAAAGTATCCATTATCCAAACAGCCCAATGGAATCATCACCATTGATACAAGTATTAATATTTCTTTATATGATTCTGGAGGTTGTATAATTTCACCTGACTGAATGTAGGCACATTGATtgttgatttattttattgcattaTAGCATTTGTACTAATATCTCTATTTTCTTGATCTTTCTAAGGGTTAAGAGTACAAAGATGTATATTTGATACATAAACATAGTTTAAATTCAAGCTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353936 lncRNA upstream 3603 53442564 ~ 53442820 (+) True G1187192
TU1353912 lncRNA upstream 18383 53427418 ~ 53428040 (+) True G1187173
TU1353906 lncRNA upstream 25381 53420774 ~ 53421042 (+) True G1187167
TU1353901 lncRNA upstream 33322 53411591 ~ 53413101 (+) True G1187163
TU1353886 lncRNA upstream 49392 53391858 ~ 53397031 (+) True G1187151
TU1354009 lncRNA downstream 192184 53641900 ~ 53653613 (+) True G1187245
TU1354017 lncRNA downstream 218700 53668416 ~ 53669862 (+) True G1187253
TU1354024 lncRNA downstream 226793 53676509 ~ 53766636 (+) False G1187259
TU1354025 lncRNA downstream 226793 53676509 ~ 53766212 (+) True G1187259
TU1354008 lncRNA downstream 263408 53713124 ~ 53716000 (+) True G1187244
XR_005035597.1 mRNA upstream 200935 53228140 ~ 53245488 (+) True LOC118938324
XR_005035596.1 mRNA upstream 217512 53228140 ~ 53228911 (+) False LOC118938324
XM_036941477.1 mRNA upstream 308125 53133550 ~ 53138298 (+) True LOC110518612
XM_036941476.1 mRNA upstream 324019 53116272 ~ 53122404 (+) True LOC110486782
XM_036941470.1 mRNA upstream 399485 52907898 ~ 53046938 (+) False LOC110539012
XM_036941491.1 mRNA downstream 6620 53456336 ~ 53458621 (+) False LOC110538736
XM_036941490.1 mRNA downstream 6621 53456337 ~ 53458621 (+) True LOC110538736
XM_036941489.1 mRNA downstream 14494 53464210 ~ 53478284 (+) True cdr2a
trnal-uag-2 mRNA downstream 95767 53545483 ~ 53545564 (+) True trnal-uag-2
XR_005035599.1 mRNA downstream 176318 53626034 ~ 53634165 (+) False LOC110538749
TU1353565 other upstream 423442 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1057227 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1090482 52274330 ~ 52355941 (+) True G1185855
TU1352291 other upstream 1269918 52175266 ~ 52176505 (+) True G1185815
TU1352263 other upstream 1314396 52121577 ~ 52132027 (+) True LOC110486764
TU1354243 other downstream 738851 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 738851 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 814350 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 841869 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1543958 54993674 ~ 54997295 (+) False G1188344

Expression Profile