RNA id: XM_036941491.1


Basic Information

Item Value
RNA id XM_036941491.1
length 1176
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110538736
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53456336 ~ 53458621 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAGATCAGCGAACAGATTGATTCTCACATCTCGCTGATGCTGCAACACGAGAAGACAGTTTTGACTGACAACTGTGAGAGAATTTGTTTGGGATTACAACACCAAACACATAATGATGAGATACTTGGTAAACAGGATGGAAAACTGAGAGAAGTGAAAACATCCATCTTCCTGTTCTGTCTATTGCACACTTAAGTCATGAGATcacagcgcgcacacacacatatcgtGTCAACATTATGTTTTCATCAGAACGGATTTGTCAGTGTTCTCCTCTATCACGCTAATTAATCTCGACAGCCGTCATCATGGAGAAGAAGGAAAACTGCCCCCCAGGGTTATCGTTACACCAGCCAGACGATATCATTTGGCGGATAGGGGGTCAGTCAGCCTCTCTCCCCTGTAACATCGCATATGATACCAATAGGAACATTGATTTCCTCTGGTTCGTCTTCAAGCAGGACGCTCACCACTCGGTCGATCTGATAACCCAGCAACACAAATACAGCCTGGAGAGAAACAGCCTAAATATCAACTCACTCCAGGCCAATGACAGCGGGGTGTACCACTGTGCTGCCTTGTTTAGAGACGTGGTATGCAGCGGGGCACAGGAGATAGGGCAGGGCACCACGCTGGTGGTGAGAGAGAGGGGCGTGCAGATGACCTGGCATGTTTTGCTGTGGCTGCTGTTTGTCCTGTTAGTCTTGTACAGTCTGGCAATACTGATTCTGATCATTCGTAAGAAGAAGAATAAAGTTCGAGTACAGTTTGGTGCTGTTGTGCAAGAGCTGTACGGTAAGAGGAACTTACGAAGTAACAAGAAAAACCCCAACCACAGTGGCCCTGCTCAAAACAAGGTTGAAAGCCCCCACTCCAACCATCCAGAGGACATTTACCAAAACCAGtgactcaacaaaaagaagaaccACTAATGACAGCTACTTCCCTACACAGACTGATCTTCAGGCGGGAGACTATAAACGAAGGACACTGCTGACCTGCAAAACGACTAACCAAAATCTAAAACTGACCCTTAGCTTAACCAAAGAGAGTAACCAGACAAAAACAATCTCGATTTATTGATAAACTTCAAATTAATCAGAAAGAAAAACAGAAGTCCCTCTACTGAATCTGAAGTTCACCTATTTGAATatccacattttttttgtccatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353936 lncRNA upstream 13516 53442564 ~ 53442820 (+) True G1187192
TU1353912 lncRNA upstream 28296 53427418 ~ 53428040 (+) True G1187173
TU1353906 lncRNA upstream 35294 53420774 ~ 53421042 (+) True G1187167
TU1353901 lncRNA upstream 43235 53411591 ~ 53413101 (+) True G1187163
TU1353886 lncRNA upstream 59305 53391858 ~ 53397031 (+) True G1187151
TU1354009 lncRNA downstream 183279 53641900 ~ 53653613 (+) True G1187245
TU1354017 lncRNA downstream 209795 53668416 ~ 53669862 (+) True G1187253
TU1354024 lncRNA downstream 217888 53676509 ~ 53766636 (+) False G1187259
TU1354025 lncRNA downstream 217888 53676509 ~ 53766212 (+) True G1187259
TU1354008 lncRNA downstream 254503 53713124 ~ 53716000 (+) True G1187244
XM_036941497.1 mRNA upstream 5863 53445356 ~ 53450473 (+) False LOC110538743
XM_036941498.1 mRNA upstream 7228 53445346 ~ 53449108 (+) False LOC110538743
XM_036941493.1 mRNA upstream 9324 53445335 ~ 53447012 (+) False LOC110538743
XM_036941494.1 mRNA upstream 9324 53445335 ~ 53447012 (+) False LOC110538743
XM_036941495.1 mRNA upstream 9324 53445335 ~ 53447012 (+) False LOC110538743
XM_036941489.1 mRNA downstream 5589 53464210 ~ 53478284 (+) True cdr2a
trnal-uag-2 mRNA downstream 86862 53545483 ~ 53545564 (+) True trnal-uag-2
XR_005035599.1 mRNA downstream 167413 53626034 ~ 53634165 (+) False LOC110538749
XM_021625714.2 mRNA downstream 171858 53630479 ~ 53634165 (+) True LOC110538749
XM_036939766.1 mRNA downstream 200149 53658770 ~ 53662221 (+) True LOC110515633
TU1353929 other upstream 5872 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 6620 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 433355 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1067140 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1100395 52274330 ~ 52355941 (+) True G1185855
TU1354243 other downstream 729946 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 729946 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 805445 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 832964 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1535053 54993674 ~ 54997295 (+) False G1188344

Expression Profile