RNA id: XM_036941500.1


Basic Information

Item Value
RNA id XM_036941500.1
length 4341
RNA type mRNA
GC content 0.52
exon number 32
gene id vwa3a
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53566463 ~ 53597472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACATTGAAGAGGGTAGGTTACGACTGTCTCAGCCTCGACTTTCCACACGAAAACTCTCATCGAAGCACCCTCAATATATCTGTACAACTTTATATACGATTTAGCAAGCTTTGAGACAAAACCGATTATTGCATAAACTGGCGCGAGGCACCATTCGGACACATCCATGTTTTGAGTCTTCAGAATGTCTTGAGAAAGACGCTCTGATTGTCCACCGGTCGACCCTGCAAGCAAAGGTGTGATGGAAGCGGCCAGTACTTCCCTCAGAGATGACTGCCCTCCCTGGGAAGATGTGTCTCTGTCTGCCCCTCACAGAGACGATGGTCTACTGGTCACCCATGTCAACCAAACACAAGACTTACTGAGGTCACAGGGTCAGGCTGCGGAGTGGAAGAGCTCCTCTGATTGGCTCCTGACCCACAGTCTCTACAGCTCCGGCCTCTCCCTATCAACACTCCTCTCACACGGGACCACTAAGATCAGTGCTGAGGAGGACGGAGGACTCAGCAGACAGCTGGAGATCACTGCTGCAGCACTCATTCACTTTGACTTCCAGCTGTACCAGGCCATTGAGCTGTACCATGGCAGAATAAGATGGCTGAACCAAGGAAGTATGAAGgtgtTTGGGCTGGTGAAGGGGTCCAGAGTAGGGGTCATAGTTGACACCTCAGATGTTAACTGCACCAAGGACAGACTGCCAGATCTACAGAAGAACCTCCTGtcTCTGATAGAAGAGCAGCTCAGCTGTAAGCGTCAGCTGTACCtgatgtcctgtggtactgagaCCAGCAGCCTTTGGGACGGCCCCAGAGACATCGACACCTTCAGACTGCAGGAGGCTTGTGGCTGGGTGGATGAGCTGGGAGCCAGGGGGGGATGTAACCTCCTACAGGCCCTGAAGAGAGGCCTTGACCTGGGCTGCACTCAGCTTGACTCCCTGGTCATCGTCCTGGGCTCCAGcCCTGACCAGACCGCAGATGCCCTCTTTGATTACGTAGGACAAAGCATTTTGGGAAGGACGTTGTTGATCCATGTGGTGTCCTACTGTAGCGTTAGCCCTCTGACCATTGCAACTGTAAAGAGACTAGCTGAAGTTACACAGGGACGCCACCACATCTTCTCAGCTTCCCTGggTGTAGTAGACAGCAGTACAGATGTGGAGCTGCTGTGGACAGAGATCAAGGCAGCCAGAGAGCTGCTGGGACACACTGAGGCCCTGCGTCAGGGGCGGCTGGGGGACATGACTGTCACTGTGGTGGGACAGCAGATTTCCACAGAGTTGGACAGCTTTTCACTCTCTCCTTCGCTCCCCAGACCACCCAATCACAATGTCCCCCTGAGCATCAAGCCCCCAGGTGTCCCGCCCAGCTCCTCGGCTGATTGGCTGAGGAACCATGGACTGAAAGcTAAGAGACTGGGGCTGTACCAGGTTCTGTCTCCCAATGCCTATTCTCTACTGGAGGGGTTTGTTCCTATCCTGAACAAGACTGTCAGCTCAACAGTCCATGAGAAGGCCATGGTGCAGTTTGAGTGGCATGATGGAACGGTGAAGAACGTTCATGTGGACTTGCCCTTAATCTACCACTACCAGAAACAGCTGATGTCTGCAGTGGCTGTGTTGGAGAGGAGGGTGCAGTGGCTGAGCAGTGGGAGCAGGCAGATCTGGGGGACAGTGTGTGAACAGAGggtgGTGATTGTGGTAGACATGTCTATGATGATCCCTGGCTTCTCTCTCCACATCCAGCACTCCCTCAGGGTGCTACTGGAGGAGCAGCTGGCCAACAAACACAGCTTCAACATCATCGcGTTCGGCTCAGCTGTCAGAGCTTGGAGGGAGAGGTTGGCCCTCACCTCACCAGAGAACCTGCAGGAAGCTTGGCAgTGGGTCCAGGGTTTACAGTGTTCAGGGAGCAGGAACACCTTGGCTGCTCTGAGGCTGCCTCTGGAGGGGGACCTCAATAGTGGggcaccccctctctctctctctccctctcctcttctccctccgtCCCCCCCTCTCACCCAGGGCCTCTACCTCTTCACAAGCGGATTGCCTGACCAGGAAATTGCAACGGTGTCTTCATATGTGTCAGAGTGCTGCAGTGGCCGGCCTCTACGTCTCCACATCTGTCTGTTGactggagaggagacagagggacagacagaggcacagacGGGGGGTTGCCCTCCACCTCACCATGCCACCAGGGAGGAGACTGCGGGGGCACTGAGGGAACTGGCACAAGCTGGCAACGGACGCTTCCACTGGATCAGTGAGACAGGCATCCTGGAGAGCGATGACATAACTGCTCTgattggagagatggagagggctgCTAATTATTGGCAGAAGAGCGCCATGCTGGTGGACTCCTTGACCCAGAAGTCTGACTGTAGGTGCCCTGGGGAGGATCTCTCTCCTGGGGACAAAGCTCCGGCCCAGTCTCCCCTGGCCTGGAGACGCAGAGACAGACCACTGCCCCCACCGCGACCCACAGCACTCACCCTCGCCAGGCTGCAAATGAAGGAAGGCCGAACAAACGAGCATTCCTCCTCTCAGAAGGCTCTCGCATGGCGTCCCAGCAGTGCCACATCTACTATCCCACCGGTACAGCCCATGACTGGTTGGGGTCCAGTAGAGACTAAAGCCAAGCAGAGGAAGCCTTCTCAGGTCACCCAGTCTGTGTTCTACCTGGAAGATGGTAActtggGTGTGGTGTTCAAGTCTTACCCCAAACCTAAAAGTGTCCGAAAGTCCATCCCCTTAGTGACTCTGCCAAAGCAGGAAGAGATCTGCTCGACCAAACGGTGGCTGAAGAGGTTCAGTATTAAGAGGCAGAAGCTTGACATCTATAAGCTGGTGTCTGGACCTGACTGTACTCATCATAAGAAGCTGGTCCCTTCGGTCCTCAAGAGAGTGTCTGCCAAATACTGCTCCATCTTCCCCAGTGTCCACATCAATGGGATGGTGAAGCACCTGCAGCTGACTCCAGGAGAGTTAAAACAGTACCTTACTCAGACTGAGAGACTCCTGCTGCGCTACATGCAGAGGCTGCAATGGCTGCTCTCCGGTAGCAGGCGTGTGTTTGGGGCGGTgctggagagggaggtgtgtgtgctgCTGGATGTGTCCGGCTCCATGGCTCCCTGCCTGGGGGAGCTGAAGACCAAGCTGGCCTCTCTCATCTGGGAACAGCTGCATCACAACACAGTCAGGTTCTCTCTGCTGGCGTTCTCCGAGGGGGTGAAGGCGTGGCGTCCGGCACTGCAGGAGCCTACAGAGGAGGCGTGCCGCGACGCGGTGCAGTGGGCATATCAGCTCAACACCCATGGGGGAACCAACACTCTGGAGGCCCTGCAGACTGGCTGTGGGTTTGGGGACAGTGTGGGCCTGTACCTGCTGAGTGATGGGAAGCCAGATTCCAGCTGCAGCCTGGTGCTGAAAGAGACGGAGAGACTGACCACAGGGAACCACATTACTATCCACACTGTCTCATTCAACTGCACAGACAGCTCAGCCAATGACTTTCTGAAAAAACTGGCTCACCAAACTGGGGGTCGGTACCACCGTTGCCATGACAATGTGGATGCTCTCAGTGGGCTGTTGGAATCGGGCCTTAGTGATGGAGACGAACCTACCCTGCCGGCCCTCGAGGGAGATGACTTGAGGAGACTGGCTCAGGAAATTGACAAACTGAGACATTTCCGGAAGCAGGCACAGGTCTTCAGGGAAATCATTTTGGAAAAGAAGAATCCAGAGGAAACAACAAGAATCAACCAAACAGACTAGATTACTGTAAACCCAAGAATTTGACTTCAATGATTTTATATACGCATTTGTAATTTAGattttcaatgactcaatatagAAGAAAGTGGTTGTTAAGAGATTAAAACTGGTGTGCATGAATTTTGTCAGATTaaccatatactgtacacagtTCTTCTATTTGACCTAATTTGGGTGTGCAGTATGCTTTGTTCAGATTGACAAACCTCTGCTTTTCTTAATTTAAAACTAGAAtgcttagttgctacatccattttttacTTATAAATTATTtctatatatacccattgattcttgaagaatataatgtactgtacaaatgtctcatgagcttacttcaactgtcatacccatcagaaagcttgttttactccaatgtttgtaaaaaaaAGTAAATGTGAACAAACACTGTACAGCCTAAAGAGGCAGGGCTGACTGCTTGGTATTGTTTCTCTAGTTTGAACTAAAAACAGCTAATAACCTTATTGTGTTATATTGTTTCTATGTACCAATCAACATATCGACATGAATAAAACAAATGATTCCATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354683 lncRNA downstream 17147 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 18966 53547287 ~ 53547497 (-) True G1187823
TU1354678 lncRNA downstream 84494 53481699 ~ 53481969 (-) True G1187821
TU1354665 lncRNA downstream 123164 53442876 ~ 53443299 (-) True G1187808
TU1354601 lncRNA downstream 211013 53308264 ~ 53355450 (-) True G1187750
TU1354633 lncRNA upstream 95756 53693228 ~ 53697259 (-) True G1187779
TU1354763 lncRNA upstream 187795 53785267 ~ 53786453 (-) True G1187893
TU1354765 lncRNA upstream 194835 53792307 ~ 53792865 (-) True G1187895
TU1354802 lncRNA upstream 280054 53877526 ~ 53877991 (-) True G1187930
TU1354803 lncRNA upstream 281386 53878858 ~ 53879075 (-) True G1187931
XM_036941499.1 mRNA downstream 1797 53551060 ~ 53564666 (-) True sdr42e2
XR_005035882.1 mRNA downstream 22965 53543380 ~ 53543498 (-) True LOC118938676
XR_005035881.1 mRNA downstream 24225 53542120 ~ 53542238 (-) True LOC118938675
XR_005035880.1 mRNA downstream 25484 53540861 ~ 53540979 (-) True LOC118938674
XR_005035879.1 mRNA downstream 26737 53539608 ~ 53539726 (-) True LOC118938673
XM_036941504.1 mRNA upstream 9549 53607021 ~ 53638313 (-) False mosmoa
XM_036941505.1 mRNA upstream 44422 53641894 ~ 53658826 (-) True LOC110486787
XM_036941506.1 mRNA upstream 66030 53663502 ~ 53679228 (-) True LOC110515632
XM_021558608.2 mRNA upstream 82624 53680096 ~ 53690204 (-) True LOC110486790
XM_021558610.2 mRNA upstream 101767 53699239 ~ 53708270 (-) True LOC110486791
TU1353318 other downstream 906654 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1535803 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1537489 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 1555252 52010690 ~ 52011211 (-) True G1186216
TU1352690 other downstream 2076222 51489777 ~ 51490241 (-) True G1186154
TU1354707 other upstream 9552 53607024 ~ 53637813 (-) True mosmoa
TU1354775 other upstream 209172 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 851411 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 868061 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 1001929 54599401 ~ 54600449 (-) True G1188186

Expression Profile