RNA id: XR_005035599.1


Basic Information

Item Value
RNA id XR_005035599.1
length 3585
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110538749
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53626034 ~ 53634165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCCTACTGTAACTGTGCTTGCTCTACTAAAACAAGGCTAACCAAGACAGTTATCCAAACCTTATGCCCCAATAGCACGCAAGGAAGCAACAGGGATACTTTGGCTGTACAAGGACGAGGCCAAATTAAGAGCTATTTCCAGATGTACGCTTTTAAATATCAAATTTTCAATAGCACGGATTTGtttaaacaacaaaaacaatttcCTCAATTGTACCTCAGCGCAAAGGTTGTTTCGTCAGAACAGAGCGATCAGAACAGAACATTTTCACAGCAGTGGGAGGGCTTGGCACCGCTTGCTGGCTTTGCCATTTAGAAGTAGACCAGAAATCACTCTAAAAACAGCCACCGACACGacctatcactgagagagacaaTCAGCCGTCCATGTCAACACACCGATGAATAGAACAGaagagtgtgagagacagagcgggagagagataagagagATGGTGACAGAGACATTCTGAAGACAACAGGATCTACAGGAGGGCAGAGGGCTGCAGGCAGATTCACAGTTGTCTCCGTGACACTGACACTGCCAGTAATAATGGGCTTTGTGTAGAAGCCCAGGCAGGAAATGAAGTTTACTGTGATTGCTTGGGAACGTCACACAGAGGTGAGGACAGGGTCTTTTCAGCTGGAGAGACAACATTTCTCCTCCTTTTGTGCCAGTGGTTGTCGTGGTCCCCAAACGTCTCTGTGTTGCCCTGGGCCAGGAGTTGTTCCTAGTCAGGTTACGTAGTCAGGATTGGAGAAACTCCAGACTCTACTTATGACTTACTCACTTGCAGGCTTTTCAATTGGTCTTGTTTAACTACAAATCAATAATGTTATCTCCTTCATTAGAATTATCTTTAGCCGTGACCAAAGACAGGTGTAGAGTAACCCATTTAGGAAACAcagctgtggcattgtgttgagtGAGGAGACTCAACCCTTCTTCTGTATATTATACACACAAGGTATCTGACTCAAGGTTTCAATTACAGGGGTGTTTAGAGCTGCCGAGCTCTCCTGTAGGAAATCAAGGCACCGTAATAAGGGCACCACCCTAAGAGTCAATATGTAGCTCAAAATCAAAATCCTGGTTCCATTAACGCTAATCCAGATAACTGATGTAGGTACAGCTAACTTAATTAGGAGGTTACAAAAATCTGACCTATGATCAGTGTCTGTGGGCAACATCTTCATGCATCCCTACTAATTGGCCTGGGTGGCATTTCTGTTTCTCTACACTTTGACCTTAGAGAGACACCATGATGAGGTCCTCCGCCACTGATCCCAAATCAGGTTTGCTTTTTGTTTTTATATAGTAATGGTTTAGGTTTAATGCTGGGGTATGgtcatctgatcctagatctgagcATAGGGGCAAATTCCACTAGGATTGTGTTTGGGTGACATTTCACTCCGGTCCATAATGCCCCGCAATGAGGAATGTGTGTGGGTAACACACAAAGGATGCCATTCAATAGCCTAAAGTGACCACCTCTGCTggtctcctccactcctctttaCTGAATGCACTGGCTaggtcagggtttcccaaactaggggttgCGACCGCTTTGAAAATGGGGTCGCGAGAGAAAATGTGCGCTTACTTCATAGAACCAGGGTTACATCATTAACCTAGATGCGGTTTTAATAAAAAAGAGTGGTTTATGTAGGGCCCTATGATTTCCGAGATGCTGAAAACGCAGACGGAATTTGGTAATAAAAATGGAATCAACTGTAAAACATGGAAGATTGCAGAATTTTCCATAATTTGGCTGAAATTGAAAATGATTTCATAATTGTAAAATTAGACGAGTAGGCCTAGATAAATAATTCAGTTTTCGATTGGGGTGTTTTGAGGGGGGAGGTTGTGCGTGGGACCCTTATGTCACCTCACAACTTGGCTGTCACTTTGAGAAACATGTCGAAGAGGCCGTCTAGGACGGCCAAGTCATCAAAAATACGAAAAACTTCGACCCTAACCCCTAAATTCAGAGCAGAGCAATACCCAAAGGACTATGAGTCAGGCGATAAGCTGTTCTGCAAATTATGTCAACATACTATTGATTGGACCCGTAAAAATACATGTGATGACCACTTAAAGTCTAAAGCCCATGTGAAAAACAAGGAAAAGCACCGTGTTAGCCAGAGCATACCTCTTCAAACAACCATTTCTAGTGCAAGCTCATCAGCAGATTCAAGACGAGAATTTATTCAGGACTTTGCGGCTGTGTGCGCGCCGAGTCAGACATCCCCTTAGAAAAGCTAAGAAAGCTATGGCCGTTTTAAGTGTGAAGCACTGCAAACAGGAAGGAGCGTTCCTCGAAAATGAGAGCAGCCTCTGTCAAACTCACCCGCCCCGTGTGTGCGGCCAACATATGACTGCCGTTCTACTGAAGATCCGTGGGAAGAAGTTTGTGGTGGTTGTTGACGAGACAACAGATCCAGGGGATTGCAGCATTCTAAACATCGTCATTGGTGTTGAAAACCAGTACTTTCTGGTAGATGTCATTTTCATGGACAGATGCAACTACTCAACGTTTTCCCAAGCTATACTAGCCTCCCTCCACAGCAACCATCTGAACCTGAATGATGCCTGGGCAGTGGTCACAGACCATGCCTCCTACTGCCTGAAGGCATACAAGGAGGTTCTGAAAGGAGAGATGCCCAACAGTGTTCATGTACCCTGTCTCTATCAGGTCATCAATCTGGAGGGTGAAACCTGGCAGCACTACAAATACTTCTCTGAAGTTGCATCACTTGGGACATGGATGAGATCTGTCTTCTTCAAGAAGCCTGTCAGAAATAGAAGATGGGTGAGCTTCCTCATTATGAAGGAGTTTGTGCAGGCCAAGGCTCCTCCTGAAGCAGTGAGCTCCAGATGGAATAGTTCATTTGAGGCAGTGAAGTACCATGCAGagcatgttcatctgtacagagAGTTTTTGTTGGCAGAAAAGTCATCATCCCAGGCAGTCACAAACCTCCTCAGCCAGCTGGAAACAGAGGAGAAGGTTGCTGCATTGTTGCCTACATTCTTGCATTATTATGTTTTAATTTATAATGAAACACTTTGTAGAACTCTGTATTGAAGCACTTGCCATGATAACAAATTGTGAAATGTTGTGTTGCATCATTACAAATGTACTGTTTCCCTGTACTATGCCCAAAAGCCGTTAGAACCGAGTGGACAAGACCAGTGGGACTGTGATGATGTTCTTTTCTACACAGAAGATCATCCAACATTATTGCCATACCTTTGATGCACTTCAGTCACTTCATACTGTCATAGTCCAAACTAAAAAAGTAAACAATTGCAGTTGATTACATaacttattttaatttaattacattttttacatcgtGGTGTcgcaattattatttttatatcaaAATGGGGTCAGGAGCCAAAGAACCTCACAAGGTTAAAGCCATGTGGATAGACAGCCATCCAGGAATTCACCTGTTCGGTACAGGtggaggataggagacgaggaagccactttagactattgagatacacccactgaattttttattttatttaacctttatttaactaggcaagtcagttaagaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1353936 lncRNA upstream 183214 53442564 ~ 53442820 (+) True G1187192
TU1353912 lncRNA upstream 197994 53427418 ~ 53428040 (+) True G1187173
TU1353906 lncRNA upstream 204992 53420774 ~ 53421042 (+) True G1187167
TU1353901 lncRNA upstream 212933 53411591 ~ 53413101 (+) True G1187163
TU1353886 lncRNA upstream 229003 53391858 ~ 53397031 (+) True G1187151
TU1354009 lncRNA downstream 7735 53641900 ~ 53653613 (+) True G1187245
TU1354017 lncRNA downstream 34251 53668416 ~ 53669862 (+) True G1187253
TU1354024 lncRNA downstream 42344 53676509 ~ 53766636 (+) False G1187259
TU1354025 lncRNA downstream 42344 53676509 ~ 53766212 (+) True G1187259
TU1354008 lncRNA downstream 78959 53713124 ~ 53716000 (+) True G1187244
trnal-uag-2 mRNA upstream 80470 53545483 ~ 53545564 (+) True trnal-uag-2
XM_036941489.1 mRNA upstream 147750 53464210 ~ 53478284 (+) True cdr2a
XM_036941491.1 mRNA upstream 167413 53456336 ~ 53458621 (+) False LOC110538736
XM_036941490.1 mRNA upstream 167413 53456337 ~ 53458621 (+) True LOC110538736
XM_036941497.1 mRNA upstream 175561 53445356 ~ 53450473 (+) False LOC110538743
XM_036939766.1 mRNA downstream 24605 53658770 ~ 53662221 (+) True LOC110515633
XM_021558611.2 mRNA downstream 56295 53690460 ~ 53694370 (+) True LOC110486792
XM_036941510.1 mRNA downstream 73158 53707323 ~ 53712693 (+) False LOC110486793
XM_036941509.1 mRNA downstream 73647 53707812 ~ 53712693 (+) False LOC110486793
XM_036941507.1 mRNA downstream 74021 53708186 ~ 53712693 (+) False LOC110486793
TU1353929 other upstream 175570 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 176318 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 603053 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1236838 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1270093 52274330 ~ 52355941 (+) True G1185855
TU1354243 other downstream 554402 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 554402 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 629901 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 657420 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1359509 54993674 ~ 54997295 (+) False G1188344

Expression Profile