RNA id: XM_021558610.2


Basic Information

Item Value
RNA id XM_021558610.2
length 2284
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110486791
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53699239 ~ 53708270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAAAATGATTCTGTCAGAATGACAAGACAGCACCCGACTCCGAAACATACCGCCACCTATCCGTCAGGATCAACTGTTACACATCCTGCAAAACagaagtaacgttagctagctagctaataagacGGTGATCACCATGGACCAACGCCACCAGTCCCACCACAGACCCCAACATCCAAACTCCAATCACCACGACAACCACCAGTCAACATTCAAGAGAGACATGGATGACAGTGGGAGAGGCCATTTCCAACACAAGCGCTTCAGACCTGGTCAGAACCATCACCCGGCTGGCCCTTCAACACCCCCATCTAGCCCCCCAACCCAGAGCCTGAGCATACAACGACAGCTGTACGAGAGAGACTTCCCCTTATACAAACAGCCTGTGGAGGTGGGACATTTCTCCCTGGACTCTGAGCGCAGGTTTTTCAATGATGCCCGGCAGCTGCGTTACTACGTGGAGCCGGAGAAGAGTTGTCCTAACTTCGACTTGAGGGACGGGTACAGGGGCCGCTTCGTCAAGAGGGACGACAGGGTGAAGGAGAAACTGGACCACATCCTCAGATGGATCCTGGCAAACAGGTCCAAGCTGCAGTCGAAGGACACAGCTGCTTCTTCTTCCCCATGTGCATTAGGTGTAGACATTGTGACATGGCGCGGCCACCTAACCAAGCTGTTGACCACGCCTTATGAGACCCGGGAGGGCTGGCTGCTGGCTGTGACCAGGATGGGGGGGACACTGTACATCAGTGAGGTGGAGACGGAGGCTGCACGCCGGGACCGGGAGAACCGCACTGAGAGGCACGAGGAGATGATGTACTGGGGATACAAATTTGAACAGTACACCTGTGCAGATGATGCCCAGAGTCTTCCAGATCCAGGTGGGGTTGTAAACACCAACGAGGCCTTCTGCACTGTAGTCCAGACCCGGCTAGCCGAGCACAGACTGCTGTTCTCTGGCGAGGTGGACTGTCGGGACAAAGACCCCAAGGCCCCGTCTCCTCCAGCCAACTACATCGAGATGAAGACCTCACTGGAAATCTCCACCCCCAAACAACGCAGCAACTTCCACAGGTTTAAACTACTAAAGTGGTGGGCCCAGTCCTTTCTTCCTGGGGTACCGCGAATCGTAGCTGGTTTCCGTGATCATGACGGAGTGGTTGTGTCTGTGGAGACTTACCACATCTCCAAGATATCTCAGCTTATCAAGAATGAAACCAACTGCTGGAAGCCAACTGTCTGCATGAACTTCTGCTGTGAATTCCTGTCCTTCGTGAAGAGTGTGGTCACAGAAGACGATCCAAGGTTGGTGCACCTGTTCTCATGGGATCCACACCGAGACGTCACCTACTCCATCCACAGAGACTCTCAGTACTCCTTCCTACCAGACTGGTACGTCAGGGAGATGACCAGTTCAACCAGTCGTGAGACACACCACCACCCACCTCAGACCTGACTCAGAACAAACCTGACAATGGTCCGTATTGACAAAGCAGCTCAGAGTAAGACTGCTGATCTAGAATAAGGTCCCTCATCCTATTCATTCTGATTTAGTAGGCAAAACGgagcctagatcagcactcctactttgaTATGCTTTATGCGTACAGGCCAAGGTTTTCACCTTATACCAGTATGGACTTGAAGCAATACTTTAACGCTGAAACCTGTTATTTGATAATGAAGTAGAAACACACCAAGCGCCCTGAAGGAGTAGGCGGGTTCTGACGGGTCGGTTTTTGACGATAAAGAAAGTTATTTTATTCAACTTCCATTTTCCTCCCAGAGTGGCTGAGTTATATAGTGTGGATCAGCATGGACTTTAGCATTCACAAACCAGCTTTTGGGACTTTCTCACAAAATGGTGTGCAGGTTCACAGAAGACATATCTTTCCTAATGGTTTGTGGTGTCTTTTTTTATGTGAAGTATTTACATTCTTCAGCTCATCtctgatttgtattttttttttacattttattacaaAATTCTGTGATCTGAATGTAACAGTTGCGGTTTGAAGTGTCTGCTCTGAAACTGTCGAACAATAGTAGCATAACAAGATTTAATTTCCCAATCAAACCTTTTTATTATTAACCCCATGGGCATATCGATCACTTATCATGTTCTTTTCTGAAGTACATGAATTAAAATATGCCacaaaaaaactaaacttaagaacatCAATATTGCATAAGCAGTTTTAACCAAAGTGTTGATGGAAACTGTCCAGTGTCAGAATGCATTGTCCTTTGTCCTATAATAAATGACACCTTCATTGAA

Function

GO: NA

KEGG:

id description
K14845 RAI1, DOM3Z; RAT1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354633 lncRNA downstream 1980 53693228 ~ 53697259 (-) True G1187779
TU1354683 lncRNA downstream 149923 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 151742 53547287 ~ 53547497 (-) True G1187823
TU1354678 lncRNA downstream 217270 53481699 ~ 53481969 (-) True G1187821
TU1354665 lncRNA downstream 255940 53442876 ~ 53443299 (-) True G1187808
TU1354763 lncRNA upstream 76997 53785267 ~ 53786453 (-) True G1187893
TU1354765 lncRNA upstream 84037 53792307 ~ 53792865 (-) True G1187895
TU1354802 lncRNA upstream 169256 53877526 ~ 53877991 (-) True G1187930
TU1354803 lncRNA upstream 170588 53878858 ~ 53879075 (-) True G1187931
TU1354822 lncRNA upstream 229190 53937460 ~ 53938325 (-) True G1187950
XM_021558608.2 mRNA downstream 9035 53680096 ~ 53690204 (-) True LOC110486790
XM_036941506.1 mRNA downstream 20011 53663502 ~ 53679228 (-) True LOC110515632
XM_036941505.1 mRNA downstream 40413 53641894 ~ 53658826 (-) True LOC110486787
XM_036941504.1 mRNA downstream 60926 53607021 ~ 53638313 (-) False mosmoa
XM_036941501.1 mRNA downstream 101767 53566463 ~ 53597472 (-) False vwa3a
XM_021558619.2 mRNA upstream 4853 53713123 ~ 53725266 (-) False LOC110486794
XM_021558620.2 mRNA upstream 4853 53713123 ~ 53725269 (-) True LOC110486794
XM_036941513.1 mRNA upstream 85306 53793576 ~ 53803352 (-) True cacng5b
XM_036941514.1 mRNA upstream 98370 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XR_005035819.1 mRNA upstream 717993 54426263 ~ 54426404 (-) True LOC118938612
TU1354707 other downstream 61426 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1039430 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1668579 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1670265 51924963 ~ 52028974 (-) False G1186381
TU1354775 other upstream 98374 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 740613 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 757263 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 891131 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 1036155 54744425 ~ 54748658 (-) True LOC110486825

Expression Profile