RNA id: XM_036941510.1


Basic Information

Item Value
RNA id XM_036941510.1
length 1077
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110486793
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53707323 ~ 53712693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttccAAACATCTCTGCCAAGAGGATGTGTAACAGTTGATCCTGACGGATAGGTGGCGGTATGTTTCGGAGTCGGGTGCTGTCTTGTCATTCTGACAGAATCATTTTGTCCGGGTTATGAACCGAAAACGGGCCCTTATATCAGACACGTTTAAAGTGAACAAACGAAGAGTTGGCAATGAGAAGCAGTTTGGAGCTGTCAACAATGGAGAAGCGGGACCACTGGACGTCAAAGCCACCCTGCAGGACCTTATGACATTATTCCCACGCAAACTCTTCAATGACGCCCTTCCACAAATTGTCCTAAAACACCAACTCTACAGCATACACAATGATAGGACCCAAGTGGACAGGCAGCTTAGTGACTTGAGGGAACAGGGGGAGCTGTTGATGTTCCAGCTGGGCTTTGATGCTGAGGCCTTTGGGTTGGTGTTCGCTGCAGACTACAAGGCTAAAGTCCTggctggggaggaggggagagggacacgGGGCACAGTGGATAAATTCCTGGAGAAAGTGCTGCCCTCCTGCAATGACCTGAGCTTCAACAAAGACAAAATGCTGAAGGAGTTTCTCTTCACAGACTCAGAGATAACGCAACTGGTGAAGTCGGGGGTTCTGACTGTGAGGGACGCTGGCAGCTGGTGGCTCTCCATCCCCAACTCTGGCAGATTCACCAAGTACCTAATACAGGGTCGTAAAGCTGTGCTGGGCATGGTTAAGAAGTCCAAATATAATGAAGTCTTAAAGGCAGAACTGGAGGAGAGGCAGACCAACTCACAGGTTAAATTCCAGATCAAGTACCACATCCATGACATCATTGGTGCAGAGCTAGTAGAATGTATACCCACAACTTCAGGAACATTGTTACGGTGTGTGGACTACTGAACCCAACTGACTGAATGGATACAACAACCTGTTTCATGGATGAAACCCTTAAAGCAACTGAACATGACGAGAGGCCATGTTACACCAACGAATCTGGTTAATCATTTATTGCCTTGTTTTTCTGCCAAATAGGTGAAATGCCAATGGTGTAAAATAAAGCCTTTTCTGGTTTGTAAATCGTTTAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354017 lncRNA upstream 37461 53668416 ~ 53669862 (+) True G1187253
TU1354009 lncRNA upstream 53710 53641900 ~ 53653613 (+) True G1187245
TU1353936 lncRNA upstream 264503 53442564 ~ 53442820 (+) True G1187192
TU1353912 lncRNA upstream 279283 53427418 ~ 53428040 (+) True G1187173
TU1353906 lncRNA upstream 286281 53420774 ~ 53421042 (+) True G1187167
TU1354008 lncRNA downstream 431 53713124 ~ 53716000 (+) True G1187244
TU1354037 lncRNA downstream 3613 53716306 ~ 53720111 (+) True G1187271
TU1354003 lncRNA downstream 13079 53725772 ~ 53727760 (+) True LOC110486795
TU1354097 lncRNA downstream 142689 53855382 ~ 53855971 (+) True G1187322
TU1354149 lncRNA downstream 272938 53985631 ~ 53986350 (+) True G1187372
XM_021558611.2 mRNA upstream 12953 53690460 ~ 53694370 (+) True LOC110486792
XM_036939766.1 mRNA upstream 45102 53658770 ~ 53662221 (+) True LOC110515633
XR_005035599.1 mRNA upstream 73158 53626034 ~ 53634165 (+) False LOC110538749
XM_021625714.2 mRNA upstream 73158 53630479 ~ 53634165 (+) True LOC110538749
trnal-uag-2 mRNA upstream 161759 53545483 ~ 53545564 (+) True trnal-uag-2
XR_002468118.2 mRNA downstream 11454 53724147 ~ 53727783 (+) False LOC110486795
XR_002468117.2 mRNA downstream 12623 53725316 ~ 53727783 (+) False LOC110486795
XR_002468119.2 mRNA downstream 12667 53725360 ~ 53727783 (+) False LOC110486795
XM_021558621.2 mRNA downstream 13065 53725758 ~ 53727783 (+) False LOC110486795
XM_036941512.1 mRNA downstream 30434 53743127 ~ 53791552 (+) True cyth3b
TU1353929 other upstream 256859 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 257607 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 684342 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1318127 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1351382 52274330 ~ 52355941 (+) True G1185855
TU1354243 other downstream 475874 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 475874 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 551373 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 578892 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1280981 54993674 ~ 54997295 (+) False G1188344