RNA id: XM_021558619.2


Basic Information

Item Value
RNA id XM_021558619.2
length 2173
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110486794
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53713123 ~ 53725269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCGATGTAAAACGCAGCTCTGTTTTTTTCTTCAATGGGTGGTAGCAGCTGTTTGCTCCATAATTTCCAGTTGAGAAAGTATGGGAATGTAGCAAGATCACTTCAAAAAAATATCTTATCGGACACTTTCGAAAAGACACACATTAACCTTGTCAATCAGTCTTACTTTGACCAAATAATTACAGACATTTCAAGTTTGAACAAGTTTAGACAAAATAGTGGGTAACTGAGCTAGCACCCAAGCTAGTAAACGGACTTAGCGACGCATCTGGACCAGTCTGGTAGTACGGTCCGGAACAATGCAGGCCATAAAGTGTGTCGTGGTTGGGGACGGAGCTGTGGGTAAGACATGTCTGCTGATCAGCTACACGACCAACGCCTTCCCTGGAGAGTACATCCCCACAGTGTTTGACAACTACTCTGCCAATGTGATGGTGGATGGAAAACCAGTCAACTTGGGCCTTTGGGATACAGCAGGGCAGGAGGACTACGACAGACTCCGCCCCCTCTCCTACCCACAGACGgatgtGTTCCTTATCTGTTTCTCCCTTGTGAGTCCTGCCTCGTTTGAAAATGTCCGTGCCAAGTGGTACCCAGAGGTCAGGCACCACTGCCCCAACACGCCCATCATCCTAGTGGGTACCAAGTTGGATCTGAGGGACGATAAGGACACCATCGAGAAGCTCAGGGAGAAGAAACTCACCCCTATCACCTACCCCCAGGGCCTGGCCATGGCCAAAGAGATCGGTGCGGTGAAGTACCTGGAGTGCTCGGCCCTGACCCAGCGCGGCCTGAAGACTGTGTTTGATGAGGCCATCCGGGCGGTCCTCTGCCCCCCGCCCGtcaagaagaggagaagaaagtgCTCCCTGCTCTAGAACCCCGCAGACAGGAAGTATCGGGAAGTGGGCACTCGCcgggcagggagacaggcaaCGCAGACACAAAAGCATTTTACTTCGGAATCTTTCcttttatatataatatattagtctCTACTAGTACAGCACTGGGACAAACTGTTCCTTTGTTAAAAGAAACTGAACATACAGATAGGTTTAGGAATGGGTGACATCACTGAAGTGTAAGAAATTCCAGAGGCCTTCTAAAAATGGATTTAAACTTCTGTGAGAAGGATGATGaaatgtttttgatttgttgCTCTTACTCGTAGTCCATATTGTTTACAGTCTTTAGAGGTTGTTTTGGGTGGAGTGAATTTGCCAAACTGCATACTGCAGATATTAGAAGCTGTACAGCAGACAGACACTAAACTTGTTGCTATTTTTTTTAGGTTTACCTCCTTAACAGTACAGCTAATAATTTGGCATGATGCACTGCAGTTAACGGTTACATGGTTAAGATGGCATTCTATTTGTGGGGTGGCATTCTTTATAACATGGAAATCCAGAACTAGCCAAGTTAATAGCATCACCAATTTTATTTTCACCTCCAACTACTAATTAATGTACCATACATCTAATTAGActaggactgagtttgggaaacactggtctagCCAAGTTAATAGCATCACCAATTTTATTTTCACCTCCAACTACTAATTAATGTACCATAAATCTAATTAGActaggactgagtttgggaaacactggtgcTTTTTTTGTCGATTGGAAAAAGCGTGATCCTTCAGTATTTAATGGGAGAGCTGGCGTGCCTCGTTGCACGGTTGAACCTGTTAGTCAAAAATGTTGTATCCCCCACCCGTGTCCTCCCTGTACTGTCTGAACCGAATCGTTGCCTGAGAAAAACAAAGCCTGCGACTTTATATGAGAAGATTGGATGTGAGGACTGTTTTGGGTGTCGATGTGAGATAAAAGCACCTTTTATATTAGTCTTTGGGCATTTATCAGAAACCATTTATGCAGCGATTTCTTCGTGAATAGCCCATTTGATTTACAGTAGCCACAACTACTTGGAAGGCGGAGCAAAGGAGAGCATTTAAATGACTGAGGAATGTTGTAACGGTAACTTAGCTACAGTCAGTAACgatgtagtgtgtatatattcaTCTTTGGTTATCATTTGAATTCAATTGGTTATTTTGTATTAAAAAAATTCCACTGAAGTTAATCACTCACTGTATTTTTAAACAAACTATGAACGCTATATTGTTTACCAACTACAAATAAACCTTTAATTTTCCTACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354633 lncRNA downstream 15864 53693228 ~ 53697259 (-) True G1187779
TU1354683 lncRNA downstream 163807 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 165626 53547287 ~ 53547497 (-) True G1187823
TU1354678 lncRNA downstream 231154 53481699 ~ 53481969 (-) True G1187821
TU1354665 lncRNA downstream 269824 53442876 ~ 53443299 (-) True G1187808
TU1354763 lncRNA upstream 60001 53785267 ~ 53786453 (-) True G1187893
TU1354765 lncRNA upstream 67041 53792307 ~ 53792865 (-) True G1187895
TU1354802 lncRNA upstream 152260 53877526 ~ 53877991 (-) True G1187930
TU1354803 lncRNA upstream 153592 53878858 ~ 53879075 (-) True G1187931
TU1354822 lncRNA upstream 212194 53937460 ~ 53938325 (-) True G1187950
XM_021558610.2 mRNA downstream 4853 53699239 ~ 53708270 (-) True LOC110486791
XM_021558608.2 mRNA downstream 22919 53680096 ~ 53690204 (-) True LOC110486790
XM_036941506.1 mRNA downstream 33895 53663502 ~ 53679228 (-) True LOC110515632
XM_036941505.1 mRNA downstream 54297 53641894 ~ 53658826 (-) True LOC110486787
XM_036941504.1 mRNA downstream 74810 53607021 ~ 53638313 (-) False mosmoa
XM_036941513.1 mRNA upstream 68310 53793576 ~ 53803352 (-) True cacng5b
XM_036941514.1 mRNA upstream 81374 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XR_005035819.1 mRNA upstream 700997 54426263 ~ 54426404 (-) True LOC118938612
XR_005035602.1 mRNA upstream 701170 54426436 ~ 54427449 (-) False LOC110538769
XR_002475811.2 mRNA upstream 701170 54426436 ~ 54427451 (-) False LOC110538769
TU1354707 other downstream 75310 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1053314 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1682463 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1684149 51924963 ~ 52028974 (-) False G1186381
TU1354775 other upstream 81378 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355055 other upstream 723617 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 740267 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 874135 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 1019159 54744425 ~ 54748658 (-) True LOC110486825

Expression Profile