RNA id: XR_002468117.2


Basic Information

Item Value
RNA id XR_002468117.2
length 1437
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110486795
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53724147 ~ 53727783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCACGCACGGATTTAAATCACTGATGTGCAGTGGTTTAATCCTAAAACAAAAGACAGTACATTGTGAAAAACGAAAGAAGCATGAAATTAAGAAAAGGGATATGAACTTGTATCTTTCACACAACATACGTCCAATTATTTATAAGTCCATATTGAGATTCACTGAGTGTGTTACAACTGCCACAATTGAGGACCCAACACCCCTGACTGCTCATTAGTGGGCATCTTCAGTCAGAACTTCCCAAAGAGACCCTGCAGACCTCACACAATCAACAATGTGGAAGAGGGCACTAGTATCAGGGGCCAGTGTGACAATGCGCAATGTTACACGGCCGTTGTCTCAGCCACCCCTTGTCATAGGAACCCAGTGCCTTTGTCTGGGAAGGACACCATGATGATGTCATTAACAATGGCCGCCGGGGAGTGCAGAGATCTGTGAGGTTGTACTGGGATATATCCCTCACAGCCACTCGCCACCAGAGATTCTTGAGCTGCCCATCTGGTCAGAGGAGACATAGGAAAGGATGACCAGTGGAATTCGACACTGCCTTTTTGTCGCAGACCACAAGGAGGACTGAGAAACAAAAATTACAATGACAACAATGGAATGAATGTTTTTGGAACCTTATTTCTTCTTCCTCTTAGAGTTCTGTTTGACGTGTTCATCCGTGCTCATCTGTAGTCGTCTCCGAAGGAAAACTGGAAACTTGTCATATAGTTCCCCTCATAATGAAACACAAGTATCCACTAGTTTGCATCTCCACCGCATGACATAAACCAGTGCATGTTTTCTATTCTCAGTGGTTTGGGCATTTTTTTTGAGCGGTTTTGGAAAAGTTTGTTTGCCAATGGAAAGATGGTGCAGTGAGTTGGAAAGTGGAAGAGGATACATTTCAGTGTAGCTCAGCAGGGCTACTGTTACAACCTTTCAGTGTAGCTCAGCAGGGCTACTGTTACAACCTTTCAGTGTAGCTCAGCAGGGCTACTGTTACAACCTTTCAGTATGGGTACGGTCACCTTTCAGTCTCGGTACGGTCACCTTTCAGTATGGGTACGGTCACCTTTCAGTTATAGAAAGGGCAAGGTGCTTGTTGTGTAATGTGCATCTATCCTTAGTGTCACTTCTTCTCACTGATTTGGAATGGAATGTTGCAGTGTAGGTGTCAGACAAACAGGAAGGATCCAGGAAAGGAATGACTgcatgacacacaaacacacacttgtcACCCACTTCTCTCTATCGGTCAATGGAGCTAACGAGGTGGCATTTTAGATTTGAAATAAATGGTTTATGATTTTGTCTTAGGTATGCACTCATCCTTATTTCTCAGTAAAGTGTTTGTGGGTTTTGTCAATTCTCGAGTCACTGTATTAAAAGGGTAAGGAATTTAATATGGTTGTACCTCCTTGGAAACAATAAATTATTAAACAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354037 lncRNA upstream 5205 53716306 ~ 53720111 (+) True G1187271
TU1354008 lncRNA upstream 9316 53713124 ~ 53716000 (+) True G1187244
TU1354017 lncRNA upstream 55454 53668416 ~ 53669862 (+) True G1187253
TU1354009 lncRNA upstream 71703 53641900 ~ 53653613 (+) True G1187245
TU1353936 lncRNA upstream 282496 53442564 ~ 53442820 (+) True G1187192
TU1354097 lncRNA downstream 127599 53855382 ~ 53855971 (+) True G1187322
TU1354149 lncRNA downstream 257848 53985631 ~ 53986350 (+) True G1187372
TU1354153 lncRNA downstream 282772 54010555 ~ 54011612 (+) True G1187376
TU1354215 lncRNA downstream 419415 54147198 ~ 54147698 (+) True G1187433
TU1354240 lncRNA downstream 460784 54188567 ~ 54198015 (+) False G1187452
XM_036941510.1 mRNA upstream 12623 53707323 ~ 53712693 (+) False LOC110486793
XM_036941509.1 mRNA upstream 12623 53707812 ~ 53712693 (+) False LOC110486793
XM_036941507.1 mRNA upstream 12623 53708186 ~ 53712693 (+) False LOC110486793
XM_036941511.1 mRNA upstream 12623 53708186 ~ 53712693 (+) True LOC110486793
XM_021558611.2 mRNA upstream 30946 53690460 ~ 53694370 (+) True LOC110486792
XM_036941512.1 mRNA downstream 15344 53743127 ~ 53791552 (+) True cyth3b
XR_005035600.1 mRNA downstream 313962 54041745 ~ 54046402 (+) False LOC110538759
XR_005035601.1 mRNA downstream 314005 54041788 ~ 54046399 (+) True LOC110538759
XM_036941515.1 mRNA downstream 324965 54052748 ~ 54263997 (+) False cep112
XM_036941516.1 mRNA downstream 324966 54052749 ~ 54263997 (+) True cep112
TU1353929 other upstream 274852 53446423 ~ 53450464 (+) False LOC110538743
TU1353930 other upstream 275600 53446423 ~ 53449716 (+) True LOC110538743
TU1353565 other upstream 702335 53004052 ~ 53022981 (+) True LOC110539012
TU1352390 other upstream 1336120 52378870 ~ 52389196 (+) True LOC110486767
TU1352351 other upstream 1369375 52274330 ~ 52355941 (+) True G1185855
TU1354243 other downstream 460784 54188567 ~ 54198015 (+) False G1187452
TU1354245 other downstream 460784 54188567 ~ 54194138 (+) False G1187452
TU1354170 other downstream 536283 54264066 ~ 54265028 (+) True G1187390
TU1354165 other downstream 563802 54291585 ~ 54300313 (+) True axin2
TU1355296 other downstream 1265891 54993674 ~ 54997295 (+) False G1188344

Expression Profile