RNA id: TU1354775


Basic Information

Item Value
RNA id TU1354775
length 3762
RNA type TUCP
GC content 0.42
exon number 2
gene id si:ch73-374l24.1
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 53806640 ~ 54049592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTAATTCTGGTCTCCATTTATTCTGGAGGTATCGTGAGGTACAGTATACTGTCATAATGAGATCATTCTGGAGGTATCGTGAGGTACAGTATACTGTTGTAATGAGATCATTCACCCACATAAAGTGACAGCTAGACATCCTCTTGCTGTGGGCAACATAATGCACTTCCTTTACCGCCTAATATcagccatgtctctgtctctccctctacctcccccctctctctcacacacccacacagggcGGCAAAGGAGCAGAAAACTTTGACAAGTTCTTCACACGCACCCAGCCCATGTTGACCCCTCCAGACCAGCTAGTCATCGCCAACATTGACCAGAGCGACTTCGCTGGTTTCTCCTACATCAACCCACAGTTCATCCACCCTTCCCTCCTTCACAGTGTGGTATGAGGGGATAgatcagggagaggaggaagagagagaaagaggttggtgagagagcaagagaaagagagagagggggagaagagagccatgtggactgggactgggacagcAACCCTCCACATTGACCACCAATCCCCTATTGTCCCTTTGTCAAAGAGACTAATATTATCTTCATGTGTTCTCTGGACTTCAGTCGGCGACATTCTGTAAACAAGCTGTCCGCGAACGATCTCGATTGGAATTTGTCTGATGCGATGGAGGGGGTAAGGGAGGGGTTGGTGTACAGGGGAGTATGTCTATCTGGTGATTGAGCGCAGTAATCATGGATACATTGATTTGAGAAGTAGGCCTGCAGTAAGCGTTGACAGTACAGTAAGCATTGACATGAATTGCACACTGTTACCATGGGGAACCCTTTAACTCTGCAACCTACTGGCCTAACATTCAGGAATGGGTTCCATGTTTTCCACAGTTCCAGAACCTCCTACTTGCTCTAGAACCTAGAGCCAaaccctacagtaccttcctgtccGGAAGTTGTCTGTGggactacatacagtatctcatgATTCCTCAGTGTGTTGCTATGGATAGTAAAAGAGAACTCCCTCCCTATGAAGCATGATGGAACATACCCTCCTGTCCctacctttcctctctctgttgtacctactgtactgtactgccatTTCTAAACAGTCTGCTACACCACATTCTAGATTATATTTATATACCTACAGAGAAGAGAGGTCTATTATCTACTGTTACACGAGTGCCAAAATAGAGGTGAAACAAATAATTTTATTCCAGTACATATCTATATAAACATCTACTATCTACAGCGTCCTTTTCTTACGAAATTCCTATAGTCAACTATGATGTCTTTCCTTGTGGTGAAGCCGTCAACCCTTCTGATGGTGTCAGCACGCTAAACTAAGCTCAACACCATGTTTCTCTGGCAGTTTTATTAATATACTCCAAACCCTTACCGAACGTTTACAAACCGCTATCAAACGTTTACAAAACGTTACTAAAATGTAACCCACCAAGTATAGCTGTGTCTAACCTAGTATGTTGTTAAAGAACAGCTTTTAGGTCCGTATGAACAGTTGACTGATGAAACAATGATGAACTTTTAAAGATGGTGTCCAATTTTATTTTGGGTGAAAGCACCGGTACCAATTTTCTCAGAGTTATTTAGGAGAATTTATGAGCAAGACTGAATTGAGGATATGGTTCTGTTCATAAGGTTTGCAACAACATGTAACTTGGTATTCCGGACTTCTATTTATGGGGAAAAATCTTGAACTGAGGTTCATGAGAAGACGATGTTTTGATTTTCCTACTGAAAATGCTCTTTCCATATGCACAATGCAGTTCTCGGTTGCATGCTTATTTCCTGATTCTGAAAAAGCGCTAGATGACTTTCTAGGGGCTGCAGCACACGTCTGATATTTATCATTGTGAAACCAAGTATTATGATATCTGTTGATTCATTCATTGTTGTCTGTATGAAAGTCCTACCCCACTGAAAAGCTGAATGAGATTCAGAGACTTGTTACTTATTAAACATATTCCGTATGTTTCCCTCTATACTTTTCTGTCCAGAGAGAACATTGTTTACCCTATTTGTCGACCATTTTGTAGATATCGAAAGAGCTTTTTCAAAAAGAGAAATGACTCGCAGATTTTATACCACGAACTGAATGTGCTTTTACTACCTTAGACGGGTTAAACATCTCTGTTTAGATGACTATCCCAAAAACACATGACGTTTGGCTGAATCTTTGGTAGCTTTGTTATCAGCGAAACCTTGTAATATGTATTTTCTCTATTTATCCACAGTTTGTTTTTGACTATTTTAAAGGTAGAGTCAGAGAAATGACCTTTGCACAAAAAGCATCGCGATTGCGAGAAATTGCGATGAGCAAGACTCAAGACTTCACTCTCACAAAGTCACCCACAGTATCTGTACATGGGTTCCCTTCACGCGCTTACAGAGTAGTAGGCACTGGACCAAAACTGACCCGCACTCTCAGTGTGTTGCGGAGATTGACCCACTATGCCGTTTACTTTGTGCATCTTGGTCATATCGCTGACTCTACCTTTAATGTTTCACAGACGATAtgcagtatctacagtatgtgtgaCTGTGGCGCGTGGTCCCTGGTTGAATACACTCCTACTCCTAGCCTTGGCAGAAGTGTGTTTTCTGGCTTTCGCTGTGTGCATGTGAGGGTAAGGCCTGATCTAAGCATGAGAGAAGGCATGATGCATGTTAACACAGATCCCCAGGTGTACAGTATGAAGTTCATGTGTCACCAAGCATCACAGTGAGACACACGCCTGTCCCGCTAGCCCCTCCCACTacacttctctcctctttctgttctcctcttctccattTGTTTATTGGTTTGTCTTAGTGTTCAGTCTCCTGACTCAACCAAGTTCTAAATTCAGTCAGAACTCACATCTAAGCCATGGACACAACGATTTGAATTTTCTGTCTCTTCTGTTTTGGTTGTGGTTATGTAGAAGATCTCTTTCTGTGCCAGACTGTGAACCTACATAATGAGAGATCAACACAGAACAAGCACAGGAAGTTCAATCAGACACAACTGAACTGCCAAAGAATAAAGAAACGTTGGTCTATTGTGTAATACACCCTGACCACAAAGACACCGTTGTTTTGGCGTTTCAGCCTATTGCCAAATGTCTTGCATTTAGTCCGTTTCTGTTAGACAAAAGTATTTGTAGCATGTCCTTGAAATGTAGCTGTTCAATGGGGATGACTACTGAAATGATGTTAACATGTAACTTTGATTCCATTTTAGTATTAAAGTGTCCCATCTGGACCAAATGGACCTATTAGAAATAAGGGGAACCATATGTTTACACAACATTGCTGATGAGACAAACTGAGAGGTATTTCATTGAGTCAGGATCTGTCCATCTAGATATTATGTTTTACTTCAAAGATGTGGAGGTTTCTACATGGAGAATATAGCACTCTCTATAGAACTTATCAGATACTAGTGGGAAAGAGAGGCTAACCTTAGTTAGCCCTGTGAATGACGTCTCACATTGAGAATCTATGTCTAGTGAGTGGGCGGTGTTTGGGCTACTATAGACACAAAACCTCCAAGCAGTATGTACTTTTAGGAGGAACAACAGTCACTTGCAGTCATTATTTGAATCACAGTGGCGATCATGGGACCACAACACAGGGATGTTTTGTATGCTTTGTTTTCATTTCACTCTCCTTGCTTTTGTTTGTCAGGTTCTCCCCTGTTCCTTCGCTAACTGGGGTATAAAGGATACTGTGTATGAATAAACCAATGAAAATGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354765 lncRNA downstream 13779 53792307 ~ 53792865 (-) True G1187895
TU1354763 lncRNA downstream 20191 53785267 ~ 53786453 (-) True G1187893
TU1354633 lncRNA downstream 109385 53693228 ~ 53697259 (-) True G1187779
TU1354683 lncRNA downstream 257328 53549099 ~ 53549316 (-) True G1187826
TU1354680 lncRNA downstream 259147 53547287 ~ 53547497 (-) True G1187823
TU1354802 lncRNA upstream 66769 53877526 ~ 53877991 (-) True G1187930
TU1354803 lncRNA upstream 68101 53878858 ~ 53879075 (-) True G1187931
TU1354822 lncRNA upstream 126703 53937460 ~ 53938325 (-) True G1187950
TU1354844 lncRNA upstream 176475 53987232 ~ 53987767 (-) True G1187972
TU1354847 lncRNA upstream 196621 54007378 ~ 54007651 (-) True G1187975
XM_036941513.1 mRNA downstream 3292 53793576 ~ 53803352 (-) True cacng5b
XM_021558620.2 mRNA downstream 81375 53713123 ~ 53725269 (-) True LOC110486794
XM_021558619.2 mRNA downstream 81378 53713123 ~ 53725266 (-) False LOC110486794
XM_021558610.2 mRNA downstream 98374 53699239 ~ 53708270 (-) True LOC110486791
XM_021558608.2 mRNA downstream 116440 53680096 ~ 53690204 (-) True LOC110486790
XR_005035819.1 mRNA upstream 615506 54426263 ~ 54426404 (-) True LOC118938612
XR_005035602.1 mRNA upstream 615679 54426436 ~ 54427449 (-) False LOC110538769
XR_002475811.2 mRNA upstream 615679 54426436 ~ 54427451 (-) False LOC110538769
XM_036941540.1 mRNA upstream 925957 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 930722 54741479 ~ 54748709 (-) False LOC110486825
TU1354707 other downstream 168831 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1146835 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 1775984 52025918 ~ 52030660 (-) True G1186381
TU1352963 other downstream 1777670 51924963 ~ 52028974 (-) False G1186381
TU1352758 other downstream 1795433 52010690 ~ 52011211 (-) True G1186216
TU1355055 other upstream 638126 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 654776 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 788644 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 933668 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 1013155 54823912 ~ 54831322 (-) False LOC110485228

Expression Profile