RNA id: XM_036941518.1


Basic Information

Item Value
RNA id XM_036941518.1
length 5594
RNA type mRNA
GC content 0.52
exon number 10
gene id axin2
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54272638 ~ 54300365 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTCGTTGTGATAAGTATTTGGGCACTTTATCTAAACTTTGATACGCTTTTTAGAGGACTATTCATCACGAAATAAGTATTTGGAATTCCTCCCCCCGTGAGATCTGAATACTTTTCTGTGTGGTTGGATGAAGCAATGTAGCCTATTTTACCCACTAAAGATAGAAGAGCGTTATGGAATTAGGTAGTTGCACATTTATATTATTTCTGGTGCAGAATATAAACGGCGATGTAGGCTAATGAGGATCTCGATTCGGCCGATTTATGGATTGAGGTGATTTATTCGCTTTCGCCTCAAAGCAAGTGTTACAACTTCGAAAGGTGATCTTGTTACAGTTTCTGATCGGAGAATACAGTGTAGCGTTTAGCAGCCATCGGTTGTCGGCTCTGCTTCCATGTCTATAGCCTGTTTCTCGTGGACCGTAGCTTGCTTCTCGGAGGCCTTTAAAAATGTGTTTATCAATTTGTGGTTCATGATGTTGGTAGAACAGAAATCAGAGAACCCGCATATCATTTTTTACCTTGGTTAGCCTACTTCAAAAGGCAAGTTCAGTTCAAAATCAACGCTCTCCATCACGTTTTCAAAACATGTCCTGTAGCCTAGTCTAGTAACGTTAGTCTGTTTCTTGGATACGTTTAGGGTTGTGTAATCTATTCCATCTATTCCATTTGGACCGTTTGGCTGTTTTGTGACGCGTATGATGAGAAAATAGTGAACGGAAAGTGGCGTCACGCCTCGTTGTGGGTTGGTGTCTGTTGGTCGGTGGTGTACTGGACATGTGCTGCGGCGTGTTCAGGATCAGATTGGGCTTGATGGCCAGCTAATTGTTGAGGTGTTCACGAGAACACCGGCTCACAGATAGCGATCTTCGAGAGAAGACTGGCAGAGAAGCTCCCCGGCTGACTATAGAGAGTGAGGAGATTGTTGTAGCGCTCTGAGGCGAACAACGCACAGGATTTCTGTTGCTGCTGCCTTCGGAGCCATGAGCAGAGCGCTTATATCGGACCATATCGCCAATAGCTTCCGAGAAGATGCTCCCCGTCCCCCGGTCCCGGGGGAGGAGGGCGAGGTGCTGCCGTGCTACCCCGGCAAACTCGCCATGATGAGACCCCAGGGTACCGCGGTCAAAGCGCTTTTGCTCGCGCCTCCCGGTTACATTGCGAAGAGGAACGAGGATGGACTTGGGGAACCCGAGGGGAGCGCGTCACCGGATTCGCCGCTAGCCCGGTGGACCAAGTCGTTGCATTCTCTTCTTGGGGACCAAGACGGTGCTCATCTATTTAGGACATTCCTGGAGCGCGAGAAATGCGTCGACACTTTAGACTTTTGGTTCGCCTGTAATGGTTTCAGGCAGATGGACCTCAAGGATACCAAAACGATGCGAGTCGCCAAAGCTATTTACAAGCGCTATATTGACACCAGCAGCATAGTTGCCAAGCAGCTCAAGCCTGCGACCAAAACCTTCATTCGGGATAATATTAAGAAGCAACAGATTGATTCGGCTATGTTCGACCAGGCACAGACTGAGATCCAGACCAGCATGGAGGAGAGCCCCTACCAGATGTTCTTGACCTCGGACATTTACCTCGAGTATGTGAGGAGCGGGGGCGAGAACCCTGCTCATGTGAACCCTAACGGGCTAGGTAGCCTGAAGCTGGTGTGTGGGTACCTGCCCACCCTGaatgaggaagaggagtggagttGTAATGATTTCAAAGCCAAAGCGCTGGCTTCTGTGGTTGGACTTTCTGCCCAGGCACTGAGGGCAACAGTGTCTATGAGGACGGTGATGGAGAAGGGGTACAGGTCCCACAGGCGAGGGGACCCGGTCAACCCGTACCATGTGGGCTCATTTGCCCCAGCCACCAGCACCAACGACAGCGAGGTGTCCAGCGACGCCACGACAGACGACTCCATGTCCATGACAGACAGCAGTGTAGAAGGCATCCCTCCCTACAAGCTGGGCTCCAAGAAGCACatgcagagagagatgcagcGCAACATGAGGATGAACAGCCAGGTCTCTCTACCTGCCTTCCCTcGGACACAGAGATGTCCTAAGGAGATGACTCCGGTAGAGCCGGCAGCGTTTGCGTCTCAGCTCATTTCTCGTCTGGAGCGTCTGAAAAGAGAACAGGAGACCATGAGTTCCCTGGAGGAGAGGCTGCAGCAGATGCAAGAGgaggaggagagggacgagGCTGAGGTGCCCGGCAGTAGTGCCCCCCtgctctccccccaccccctgtcCCTCCAGCCCACCGGCCCCAACGATGAGGACCCCCAGGCCATTCTGGATGACCACCTGTCCCGTGTCCTAAAGACCCCTGGCTGCCAGTCCCCGTCCACCGTGGCCCGCCATTCACCCCGCTCCCGCTCTCCAGAGCACAGGACTCTTTCCCGGGGAGGCCCCGGTCTCAAGCCCCTGGTCTCACCCGGGGCCTCCAGCCCCAGTGGCACCTCCAGCTTAGGGGGCTTCTCAGTAGGTTTCACTCCAGGAAGGGCCCTCTCCCTGGGCAGGCCCAGCAGCAGCACCAAGCAcatccaccaccactacatccaccacCACGCCGGTTCCAAGAGCAAggagcagatggagagagaggcagccCAGAGGGTGTTGTGTCTGTGTCCGGTGCGGTCTGTAGGGGCGGAGGGTGGTCCCCCTTACCCACGCAGTCGCAGCCTGGGCAGGGAGATGGTGTCCTGTGGCAGCAGTCCCGCAGAGTCCAATATGGGGCGCTCCAGTTCCCTTTCCCGAGGGGGTTGTCGGTCGGGGGCTGAGGAGGGGGCAGCAGAGGGGGGTGAGGTCATGCCCCTCCAGCTACCCAGCGACAGCACAGACCGCTCCCAGAACGTGTGGCAGTGGATCCTGGAGAGTGACCGGCAGGACAAGCACCACAAGCCCCACAGTACCCAGAGCACTAAGAAGGCGTATGGTGGCGGAGCGGCGTCCAACCAGACACACACGTGGGGCGGCGGAGGTGCCAGCGCCCATCTCCGTGCCCACCAGCCCGCCCATCCCTTTATCCAGGACCCGGCCATGCCCCCCCTGCCCCCGCCCAACACCCTGTCCCAGCTGGAGGAAGCCTGTCGCAGACTAGAGGAGGCCTCCGTCTCCAAACCCCCCAAACAGAGCAGACACTCTACATCCAGCCTCCAGAGAGAGAAGTGCCACCCTATGCCTGTCCAGAGTGGGACCTGTCCAGTGCCGTCCCCCCTCAGCTCCGGTCCTGCTGCTTCTCTCCAAACAGAAGAgcTGAGAGACACCAACAGGGTGCTGCAGGTGACGACAGGCTGCCATGTTGCTCCAGCcatggggagtgagacagaggTAACCTACTTCTTCTGTGGTGAGGAGATCCCCTACCGTAGGCGCATGAAGACACACAGCCTCACACTGGGACACTTTAAAGAACAGCTCCGCAAGAAGGGACACTACAGGTACTACTTCAAGAGGGCCAGTGATGAGTTTAAGTGTGGAGCCGTGTTCGAGGAGGTGTTGGATGACAGCTCTGTTCTGCCCAGGTACCAGGGGAAGATCCTGGGCAAGGTGGAGAGGATGGACTGATACCCCTCCAGAAGTACCAGAGGAATGTATTACAGAAACTCCATGGACACCACCCCCCTGTTCCACCAGAGAGTCTTAAAGCTAAGGACTGATGACTGGAGATTCTGTTGAAGAAGCTTGGCCAATGAAGGATGGAGAGTGGAGTACAGGAGTAGAGGAGTAGCCATCAACAGGACTATTTAACAACATCTCGTCTTGGAGATGAAAGAGGAGAAAATGGTGGACTGTGGGTTGGGTTTGGATACGGGTGTTGGGTTCCAGAAACTATACGTGAATTGAATGACCACTATCTGAGGGAGTAGGCTGGGACCTCTGAAAGCTGAGAGACTGCTAGAGGTGAAAGGTTGAGAGGTGAAAGTTGGGACTGGTGCCCTATCTGAGCCTGCCTCTACCAACAACCCTAGATGTATATGCAGATGGACATATAATGATTTTTTTGATAAATGTAAAGAGTTTATAAATAATTTATTGAAATGTCACTCCCCATAGTCCTGTGGATGGACAAGCTGCTTGGAGAATTGGGACATGTCGTCTCCAATATTTCAAATGCAAAGTATTTAGTTTTCCACCCTCCCCTTTCCTGCCTTGTCAACTAATCCTGTGGCAGTGTTTTCTGTTCTGATCAGTGACTTCCTGCCCTAACTTCACAGTGTGGTATAGCGCAGGTACCACAGCCCTGTAAGTCTCATCTCTCAGTGCCTTTGTTTTGTTGCCTAGGCTTTGCACAGGGAACGAGCCCACACTTAGGACAACACTACCCCCGAACTGGCCCTAAACTGGCCCAGAGCACCAAACTACCCCCTAACTGGCCCTAAACTGGCCCAGAGCACCAAACTACCCCCGAACTGGCCCTAAACTGGCCCAGAGCACCAAACTACCCCCGAACTGGCCCTAAACTGGCCCAGAGCACCAAACTACCCCGAACTGGCCCTAACTGGCCCAGAGCACCAAACTACCCCGAACTGGGCCTAAACTGGCCCAGAGCACCAAACTACCCCCGAACTGGCCCTAAACTGGCCCAGAGCACCAAACTACCCCCGAACTGGCCCTAAACTGGCCCAGAGCATCAAACTACCCCGAACTGGCCCTAACTGGCCCAGAGCACCAAACTACCCCGAACTGGGCCTAAACTGGCCCAGAGCACCAAACTACCCCAAATTGCAGAAACATGCTAACATAGATTTAAAGACAAGCCCACCAAATGAATCTATACCAGCCAAGCTCAACAGTTGTTTTGTGTATAGCCACCCCTCATTCCTTGATGTCCTGGCTTGTGAGCAGAACAACAGatccaggggtgtattcattaggtcGAACGGAAGGAAACTGACAAAGGGGGAGGGACTACCTTTCCTGGatctgtccaataagaaacgcacATTTTCATGTTTAGCAAAACCAGTTCTGATACATGTCCTAATGAGTATGTCTGCCTTCGAGAgactagtcccccccccccccccccccaaaaaaaaaatgttttgtcccCCCACAAATGTTAGTGGTATTTACACCTCTGATTGTGTTGAATTCACCAGTCTCTCCTGTGTGTCTTGTTGACCCTTGACAGAGGAAGAGGTTATGATGCTAACACACACTACGATGCTGCGTCTGAAATGGAACCCTCTTCCCTATGACCAGGGCAAGAGTAGTGCactccatagggaatagggtggcgttTGGAGGAAGCCGTAGTGTTTAACTGAGTACAGTAGCTGTGCCTACATGGGTCCCTTTACCATGTTACTACCCTGTTATCGGGGTATGATACTCCCTTGGTTTTCACAAGGGGCTTATGTTCAAAAGAGATTTTATTACTATGCCTTTTTACCATCTCCTTGTAATCACgtttgttttatatttttcatGGCTTTTTTTTGTTCCACTTGTATTAAAACTGTAAATGATGCATTCTATTCTGTAGAGCTCCATTGGAAAGATGCCTCGGTACTTTAATTcatgtaattattattataaagAGATGTAGCCTTtattaaaatgttatatttttcaaATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354280 lncRNA upstream 3734 54269319 ~ 54269899 (+) True G1187486
TU1354240 lncRNA upstream 75618 54188567 ~ 54198015 (+) False G1187452
TU1354239 lncRNA upstream 76095 54192088 ~ 54197538 (+) True G1187452
TU1354215 lncRNA upstream 125935 54147198 ~ 54147698 (+) True G1187433
TU1354153 lncRNA upstream 262021 54010555 ~ 54011612 (+) True G1187376
TU1354336 lncRNA downstream 47637 54348002 ~ 54348250 (+) True G1187524
TU1354345 lncRNA downstream 70247 54370612 ~ 54372602 (+) True G1187532
TU1354319 lncRNA downstream 127237 54427602 ~ 54433146 (+) True LOC110538772
TU1354390 lncRNA downstream 301876 54602241 ~ 54602568 (+) True G1187571
TU1354389 lncRNA downstream 310479 54610844 ~ 54612914 (+) True LOC118938328
XM_036941515.1 mRNA upstream 9636 54052748 ~ 54263997 (+) False cep112
XM_036941516.1 mRNA upstream 9636 54052749 ~ 54263997 (+) True cep112
XR_005035600.1 mRNA upstream 227231 54041745 ~ 54046402 (+) False LOC110538759
XR_005035601.1 mRNA upstream 227234 54041788 ~ 54046399 (+) True LOC110538759
XM_036941512.1 mRNA upstream 482081 53743127 ~ 53791552 (+) True cyth3b
XM_036941521.1 mRNA downstream 85140 54385505 ~ 54425642 (+) False tex2
XM_036941522.1 mRNA downstream 85140 54385505 ~ 54425642 (+) True tex2
XM_036941523.1 mRNA downstream 127200 54427565 ~ 54455175 (+) False LOC110538772
XM_036941524.1 mRNA downstream 127200 54427565 ~ 54455175 (+) False LOC110538772
XM_036941525.1 mRNA downstream 157190 54457555 ~ 54470898 (+) False samd9l
TU1354170 other upstream 8605 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 75618 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 79495 54188567 ~ 54194138 (+) False G1187452
TU1353929 other upstream 823169 53446423 ~ 53450464 (+) False LOC110538743
TU1355296 other downstream 693309 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 693309 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 693309 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 820896 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 1040359 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile