RNA id: TU1355017


Basic Information

Item Value
RNA id TU1355017
length 512
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC110538769
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54426436 ~ 54427451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGCTCAGTCTGTGCAGACTAAACTCGACATTTGTTTACCCATATTGTTTGATGGACGCAAGAAGATTATACATTGAAAACTGTAGTGAGTGAATGTCAATTAATCCCTATTATGTAATTTGCCAAGGAACTCAGTAAAAAGGCCAGTAGCTAATGGCTAACTAGCTACTTACGACTCGTTCAAGGAAAGTCGGAGGCCATTACGAGCACCACAATCATGTGCGGAGATTGCGCACGTGGTCCGCAGCATGGCCCTCGAGTCCACGTTGGGACCATGGAACCCCTTGTGTTCTCTTGAGGGAATCGTGGCTTGTCTTGGAGCAGGAGACGTGTAAGCCATTAACAGCGTGTCTCCTTTCTACGAAGGAACCCTGCATCATTCAGGTTTCCCTCAGACGAAGATGCAGTCATGGGAGTCCAATGTGGTGCAAAATGAATACCAGGGAGAGACTTCAACTGATACAACTACATTTATTGAACATTATTAAGTTGTCCAATAAAGTCATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355011 lncRNA downstream 28815 54397276 ~ 54397630 (-) True G1188115
TU1355002 lncRNA downstream 78115 54348130 ~ 54348330 (-) True G1188106
TU1354978 lncRNA downstream 135318 54290835 ~ 54291127 (-) True G1188083
TU1354977 lncRNA downstream 135840 54290305 ~ 54290605 (-) True G1188082
TU1354957 lncRNA downstream 161421 54264036 ~ 54265024 (-) True G1188073
TU1355053 lncRNA upstream 25716 54453146 ~ 54455169 (-) True G1188146
TU1355035 lncRNA upstream 30180 54457610 ~ 54549633 (-) True G1188128
TU1355031 lncRNA upstream 37684 54465114 ~ 54465805 (-) False G1188127
TU1355063 lncRNA upstream 84748 54512178 ~ 54517142 (-) True G1188155
TU1355071 lncRNA upstream 96268 54523698 ~ 54524645 (-) True G1188161
XR_005035819.1 mRNA downstream 41 54426263 ~ 54426404 (-) True LOC118938612
XM_036941514.1 mRNA downstream 376853 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XM_036941513.1 mRNA downstream 623093 53793576 ~ 53803352 (-) True cacng5b
XM_021558620.2 mRNA downstream 701176 53713123 ~ 53725269 (-) True LOC110486794
XM_021558619.2 mRNA downstream 701179 53713123 ~ 53725266 (-) False LOC110486794
XM_036941540.1 mRNA upstream 309284 54736714 ~ 54740723 (-) True LOC118938329
XM_036939769.1 mRNA upstream 314049 54741479 ~ 54748709 (-) False LOC110486825
XM_036941548.1 mRNA upstream 385692 54813122 ~ 54831352 (-) False LOC110485228
XM_036941552.1 mRNA upstream 405680 54833110 ~ 54862652 (-) False LOC110486827
XM_036941549.1 mRNA upstream 405680 54833110 ~ 54889445 (-) False LOC110486827
TU1354775 other downstream 615688 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 788632 53607024 ~ 53637813 (-) True mosmoa
TU1353318 other downstream 1766636 52659331 ~ 52659809 (-) True G1186670
TU1352962 other downstream 2395785 52025918 ~ 52030660 (-) True G1186381
TU1352758 other downstream 2415234 52010690 ~ 52011211 (-) True G1186216
TU1355055 other upstream 21453 54448883 ~ 54450020 (-) True G1188147
TU1355033 other upstream 38103 54465533 ~ 54470838 (-) True G1188127
TU1355100 other upstream 171971 54599401 ~ 54600449 (-) True G1188186
TU1355133 other upstream 316995 54744425 ~ 54748658 (-) True LOC110486825
TU1355147 other upstream 396482 54823912 ~ 54831322 (-) False LOC110485228

Expression Profile