RNA id: XM_036941523.1


Basic Information

Item Value
RNA id XM_036941523.1
length 4989
RNA type mRNA
GC content 0.52
exon number 22
gene id LOC110538772
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54427565 ~ 54455175 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccacTGTTTCGGACTTCGCAATCTAAGTCCAACACCCACATATTCATTTCAGGAAGATGCAAGTTGGACCGGCACAGAGCCAGTAACACTTGATTACCGAAGCAAGAAGAGTAGCAACgccacagacaaactgaaatgttttGATATCGTAACTCTTTGGGAATGCCTCTTTAAAACTTGGTTGTATCGACGCATTGCATTCTATGTAACTCGTACTACCCCGTCTGGACTGTATGATGGACTGGACGGTTAGCAGTCGGGCCCTATTGTGGTGCATATTCACGTTACTGTGTAGTATTGACCCACTTCAAGTGAGTTTCTGCCGCGCCAGCACCATCTCCCTCCCCGAAAGCCTGCTCTTTGTGTCCACCCTGGATGGAAACCTACACGCCGTCAGCAAGAAATCAGGCTCTATCAAATGGACGCTGAAAGAGGATCCTGTTCTGCAGGTTCCAACGCATGTGGCGGAGCCAGCTTTTCTGCCTGACCCTAACGATGGCAGCCTGTACTCTCTAGGAGGGAAGAACAACGAGGGACTGACTAAACTGCCTTTCACCATACCTGAGCTGGTCCAGGCGTCGCCCTGCCGCAGCTCTGACGGGATCATCTACATGGGTAAGAAGCAGGACCTGTGGTACGTGGTGGACCTGTTGACAGGGGAGAAGCAGCAGACCCTCACTTCCTCCTTTGCTGAGATGCTgtgtccctcctcctccctgatcTACCTGGGACGCACCGAGTACACTATCACCATGTACGACACCAAGAGTAGAGAGCTCCGCTGGAATGCCACCTACTTCGACTACGCCTCCACGCTGCCTGACGACGACACCAGATACAAGATGGCCCACTTTGTCTCCAATGGTGACGGGCTGGTGGTGACAGTGGACAGTGAGTCGGGTGACGTCCAGTGGATCCAGAATTACAACTCCCCCGTGGTGGCCATGTACATATGGCAGCGTGAGGGCCTGCGCAAGGTGCCTCTCACCAACGTCGCTGTGGAAACGCTGCGCTACCTCACCTTCATGTCAGGCGAGGTGGGCCGCATCACACAGTGGAAGTATCCCTTCCCCAAGGAGAAGAAGCCCAAAAACAAACTCATGGCCACACTCTACGTAGGCAAGTACTCCACCAGCCTGTACGCATCGCCCTCCCTGGTGCATGATGGGGTCACGGTCGTGCCCCGCGGCAGCACCTTCCCCATGCTGGAGGGTCCTAACAGCCAGGAGGTAACAATGGAGGAAGAGTGTGTGATCACCCCCAGGACCAGCGTCAAATTCAACTCTGCCCTGAGGGAACGCAACCGCATCAACTTCATGAGGAACCACCTGCTCCTCATAGGTCATCATGAGACGCCTCCTGATGCCCATAACAAGATCCTGGAGAAGTTCCCTGACAGTATCCCACGCCAGCAGGGCAATGTCATCCCCCCCACCACAGAGAAGACCCTAGAGGAGAAGGTGAATGAGAGTGACATGGGAGAAGGCCCCACTGTGGGCCCCAGCCCCCCGGCGGTCACCTCCATCCAGGAGCAGCCGGGGCGAACCTCACAGGTGAGGGTGGAGGCCCCTGTGGACTCTATGCTTAAAGAcatggccaccatcattttcagCACCTTCCTCCTGGCTGGCTGGGTAGCCTTCATCATCATCTACCCCAAGagTGTTCACAAACAGCAGCAGCTGCAGCATGAACAGTTCCAGAGGCAGTTGGATGAGCGGCTGGATCTCCTGAGGAGACAGCCGTTCTCTCCCCCAGGGACCGACCTGCTCCTGCTGGCCCCGGACGCTGACTCAGACCACAGCAGTCCCAACGGCACCCCCAACATCACCCCCCGTGCATCCAACCACTCCAACCTGTCTGTGCCCGAGCTGGGCAGCTCCGCCAACGAGCACGAGGACGGAGATGAGGACTCCAACATGGTCAGAGTTGGAAAGATAATGTTCcgtcccaaaaatgttttgggacacggTGCAGAGGGAACCATCGTGTATAAGGGTCAGTTTGACAACCGTGCCGTGGCAGTCAAGAGGATCCTCCCAGAATGCTTCAGCTTTGCTGACCGTGAGGTGGACCTGCTGCGCGAGTCGGACGAGCACCCCAACGTCATCCGTTACTTCTGCACAGAGAGGGACCGCCAGTTCCAGTACATCGCCATAGAGCTGTGTACCGCCTCACTGCAAGAGTATGTGGAGAGACAGGATTTTGATCGGCATGGACTGGAGCCTGTGATGCTGCTGCAGCAGACCATGTCAGGACTGGCACACCTGCACTCCCTCAATATAGTGCACAGAGACCTGAAGCCCCACAACATCCTGGTGTCCATGCCCAACGCCCACGGTCGGGCGCGGGCCATGATCTCCGACTTTGGCCTGTGTAAGAAGCTGGCGGTGGGCCGACACAGCTTCAGCAGGAGGTCCGGGGTGCCCGGCACCGAGGGGTGGATCGCCCCAGAGGTCCTCAGTGAGGACTGCAAGGACAACCCTaCGTGCACGGTGGACATCTTCTCTGCAGGCTGTGTGTTCTACTATGTGGTGTCCTGGGGATGTCATCCCTTTGGCAAGTCCCTGCAGAGGCAAGCCAACATACTGCTGGGAGCCTACAGCCTGGACCAGCTACAGCCCCACAAACATGAGGACATCGTGGCCACAGACCTGATAGAACAGATGCTGAACATGGAGCCCCAGAGGAGACCTTCTGCTGAGAGCGTGCTCAAACACCCCTTCTTCTGGAGCCTGGAGAAACAGCTGCAGTTCTTCCAGGACTTGAGTGACAGGATAGAGAAGGAGCCGCTGGACGGACCAATCGTAAGGCAGTTGGAGCGAGGGGGGCGGGCCGTGGTGAAGTTGGACTGGAGGGAACACATCACAGTGCCTCTACAGACCGACCTACGCAAATTCCGGTCGTATAAAGGAGGGTCTGTCAGAGATCTTCTCCgtgccatgagaaacaagAAGCACCATTACAGGGAGTTACCAGCAGAGGTCCAGGAGACTCTGGGCTCCATCCCTGATGACTTTGTCTCCTACTTCACCTCCCGCTTCCCCCACCTGCTGCGCCACACCTACCTGGCCATGCGCACCTGTGCCCACGAGAGGTCATTCCTTCCCTACTACTCTAGCTCAGAGCAGCTCTCCTGGATACGGACTCCCTACACACACCCCGAGACCACCCCCCCGCTGCAGACACACACGTCGCAGCCAGAGGAACCCACATCGTCAAACACAGTACCCTCACACCCTGAGGTGTCAAACACAATTCCATCCACAGCACCCATACAGTCAGTGACCGTATCAGACTCCACACCCATACAGTCACTGTCAATCACAACAACCCCCCCACAGTCAGTGCCAACCACATTACCAGCAGAGACAGTATCATCCACATCATTACCAGTTCAACCAGTACAGCCTACATCACCCTCATCCACACTGCCAGACCTGCCTCCACAGACAGTGTTGCCCTCAGAACCCCCCACACAGTCAGAAACCCCCCTTACAGATCCCATCCCACCTGAGCCACACATACTGCCTGTGCCACATCCAGCCACACCGGACACGGAGCCTGCCTGAGAGCCGACGAGGGGTGGTGGATGAGTGCTGCACAGAGGAGCATTGCCTTACAAGTGGACACATACTGTTGCTCTGTTGCTCTGTCCTGTGCTGGTGAGGACCAGGCCTGCAGTGCCTGGGAGCTGCCGACAGTGGGGAGCAGCAGCCCAAACCAAGTGCCTTTCCTGCTCGACTGAGACAAAATGGCTCCGAATGGAATCGTCCCAATGTCCCTCGAAGCATCAAGAAGCCAGGGCTGAAATGAACTAGTGGGGGCCGTAATGTGTAGTACAGAGAGAATCTGTTTTATTTGCAATGGAGTCCCTCCTAATGTCAAGTATTGTGAGGTATTCAAGTATTGTTGGGCACAAAATACTTGGCAAAGCAAGGGAGGAATTCTTCTGTTGATGTTGTTGAAAGACAAGTCGACAATGGTATTTTTACTGTGGAATCTTATTTCTCTTAATGAGCCTATTCACTGTAAAGAGGTGTATATTATTGTATAGGTGACGACTTGATAATGACTATCTTTGAAAATCATGGGATGTGGCCAATGTGCCTTTTTAAATAACACTGTGTTATGTATGTGAGCTCTGTGAGGGTAGATGTGTCTGGAATAGTTTTGCTTGCTGCTGCAGATGCTGATTTTCTCTCTTGAATCAGTACTATTTCAGTGCCTGTCTTCCTGTGCAGGCGAGGACAGATAGTCCAAAGGGTGTTTGAACTGAACACTGGTAAAAGCAGAATGTGTTTATCTTTTCTACTTATCTCTGATAGCTTTGTGCTGTACATAAGGCACAAGGCAATATGTGATCTGTTTGTGTTTTTATTGCAGGACATCACCCAAAGTCTTGTTTGCTTGACCTCTGACTCACGAGGCCTTTACTAAAACTGGTTCAGCTATAAGTCATGACAGGATGATTTACAGAAAGCATTCACTTCACATTCTGGGTTTTGCTGTCAGAATGGTGTTTTCTCTCATCATAACTTTGATGAATGATGATCCAATGCAACATGTTTTATTCAATCATATTGTCTGTATAATGATTGGCAGTTAAATAGGTCttcatttattacatcaattaaCTGTTATAGTttgttcatattttattttttaagtgaAATACGTTTACTTCAGGTTTATTTTTGTACTGTTCATTGTACATCAAAAACCCCAAGAATGTACAGTATTTTGTCTAATGCAAGCTGTTTAAAATTAAGTGAAGAGGGTTTTGTGCAAAAGTGAACAGATTATTTTGCAGTCTCGCCTGACGATGCCTTTTACTGTTACGATTTCATTTCTAACATGCCATCCTGAATGCAAGAATAGTTTGTTTTATGATATTCCATTTTCAGTTTTGCAATTGTCTCCTTTTGCCAACATGTCTGCCATTGTTGGAGTGAAAATGCCAAATTAAATCAGCATTAATATCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354345 lncRNA upstream 54963 54370612 ~ 54372602 (+) True G1187532
TU1354336 lncRNA upstream 79315 54348002 ~ 54348250 (+) True G1187524
TU1354280 lncRNA upstream 157666 54269319 ~ 54269899 (+) True G1187486
TU1354240 lncRNA upstream 229550 54188567 ~ 54198015 (+) False G1187452
TU1354390 lncRNA downstream 147066 54602241 ~ 54602568 (+) True G1187571
TU1354389 lncRNA downstream 155669 54610844 ~ 54612914 (+) True LOC118938328
TU1354399 lncRNA downstream 193383 54648558 ~ 54648781 (+) True G1187579
TU1354402 lncRNA downstream 202531 54657706 ~ 54658404 (+) True G1187582
TU1354403 lncRNA downstream 205110 54660285 ~ 54660565 (+) True G1187583
XM_036941521.1 mRNA upstream 1923 54385505 ~ 54425642 (+) False tex2
XM_036941522.1 mRNA upstream 1923 54385505 ~ 54425642 (+) True tex2
XM_036941517.1 mRNA upstream 127200 54272638 ~ 54300365 (+) False axin2
XM_036941520.1 mRNA upstream 127200 54272638 ~ 54300365 (+) False axin2
XM_036941518.1 mRNA upstream 127200 54273633 ~ 54300365 (+) False axin2
XM_036941525.1 mRNA downstream 2380 54457555 ~ 54470898 (+) False samd9l
XM_036941528.1 mRNA downstream 2403 54457578 ~ 54544268 (+) False samd9l
XM_036941526.1 mRNA downstream 2411 54457586 ~ 54470898 (+) False samd9l
XM_036941527.1 mRNA downstream 3663 54458838 ~ 54470898 (+) True samd9l
XM_036941532.1 mRNA downstream 110113 54565288 ~ 54592971 (+) False LOC118936451
TU1354165 other upstream 127252 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 162537 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 229550 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 233427 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 977849 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 538499 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 538499 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 538499 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 666086 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 885549 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile