RNA id: XM_036941527.1


Basic Information

Item Value
RNA id XM_036941527.1
length 5572
RNA type mRNA
GC content 0.42
exon number 3
gene id samd9l
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54457555 ~ 54544268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaatctctctcggacaaggtgacttattAATATATTCGCTggtataaaaaaaatgaaatgctaattggCTGCCAATGAGGCTATCCGACAGAACTACAAATACTATCTGGACGAGACTGCTGAATccaggcaaagACTGATTATGCAAGACCCTACACAGCAGTGAGCTTGTAGACTGAAGTGCAATAATGGcAGAGGAACCTGATGAACTGCCTGTTGAAAAATGGACTGACTCCAACGTGAGCTCTTGGTTAAGAACTATTGGAGTGAAGGAGCAATACATCAAGAAGCTTTATGAGGAAGAGGTAGATGGGAGAATTCTCCTTGTACTGACTGAGGACTATCTGAGAAAAGAGATTGGAATGAAATCAGGACCAGCTCTGTTGATCATCAGAAAGAGAAATGAGCTTATAGACACCAAACAGACAACTCAGGGCAAGGAAAAGCCTCAAAGTAGCAACAATAGTGAACAGGAAAGTAAAAAGAAGAAGCAGGGATCAGCTCCCCAGATTCCAGAGACAGATCAAGGTCTTTCAGAGGAAGAGAAACAAACTCATCAAGGACAATCTGTTGAGGACAATGTGTTAACCACGAAGAGAGACTGCAAGCCACGGCCATTTGGCAAAGAAGGCATTGATTTCACATATGTCAAACATAGTGTTCTGCAACCTGAATCTGGTGTATTTGATCTAATATCTCCCTGTCATGAGTATAAGTCACTTGACAATGCTGCCAAATTGGACCGCACAAGACTACAGGCAAAATTTGCCAAAGAGGTTCTCAAATTCGGTAGTGGCTGCATGAATATCAGATCAAATGGCACAATACACTTTGGTGTGATGGACAGTAGGGATGATGCAGGCTATGTGCATGGTGAGATAATTGGTGTTCTGGTTTCTGAGAAAGATATATATGTTGATGCATTGGATCACATTGAGAGGAGTTTCTCTCGCTCTGACAGCGAGCATGTGCGACAGTGCATACGTCCACCTCGGTTTATAGAGGTTATGGACATAAATAGCACAGAAAAAAGATATGTGGTGGAGGTTGATATTGTTCCCTCCATAAGCATTGTTAAGAACCGAGTGTACTCTGTTCGCCTGCCAAACTTCAAAGAGTCCTCTAACAAGATTGAGCATGAAAAGGAAACAATCTATCGCAGGGTAGGATCAAAAACCGAGCCAGTGAGTGATCAAAATGACTTCTACCAGcgagtcagagacagagatgcCCAAAGAGAAGAGGCTGAGCATTGTCGATATGTTAACACCCCGGACATCTGCCAAGACCTCGGAAGGAAACTCACCATGCTGATAACCAGTGGCAAGAAATTCATTGAAAAGGAGAAATGGTACATTCTTGTCACTAACAAGTTCAAACCAGATGATTTGAGCAGCATTGACTTCTTGCTCAACATGaatattttttgtgtgtttgacTTTGACACAGATTCCAAGCTGTCAGGACTGTGCAGTAAATATATTCAGTACCATGCTGCAAATATGCATTTCATGCAGAACTACAAAATATCAAGTGGTATGAGCATTGGAGAATTTGTGAGCCATTTGCATTTGTTTGAGCAAACCAGCTGGATATTTTGCAACGGACGAAGCGATTACAAAGGGAATGAAAACCCCTGTGATGAGATGACATGGATCAAAACAAAAATTACACTCCTGAGGGAATCTGTGTCATTGATCTGCAAACAGGTCTTGCCAAAAGGAGCATTCCTGGTGGTCTTCCTTCTCACATCCCCTGTTGAGAAACCACTTTTGCACACCTTCTATGAGTTCTTCACAGATATGGAAGGCCATGAAGACATCATTTGCATCTCAGAATCTGAGGATAACTATCAAAAATGGCAAAGTTTTGCAGAGGGTTCATGTGGAACAGAAACTGTGAACCGTTCCAGTGTTGTCGGGATGAAAATGAGCCATGTTGATGCGACACTGCAGCGAATCCAACCTGTAACATCTCGAGACACCAAACACTTGCCTATCTACCTGAAAGGACAGTGCCTTCTTGAAACTCGTGACGAGGAAAGGATGTATTCCTTGGAAATCCTGAGTGTCAATCATTGTGATGAAACAAGCGATGATTACATCAAAGCAGAAAAAGAAAACATTGAAAGACAGTTCTACCACGGGGGAAGAGTGACCTGGTTGAATTTCTGGCTTGCAGAGAAGAGGTTTGTTGGAGAAGTAATTCAAAGGGATGCATACAGGGAGGTCTCCGAACTTCTCACAGACACTATGAAATGGGGTGTAGACAGACCTGTGAACAGTATCAACATCTACCATCACCCAGGAAGCGGTGGAAGCACAGTGGGAAGGCAAGTGTTATGGAACAAGAGGACAGACCTAAGATGTGCTGTTGTGAAGCCGTCATACTCCGCAGCCACTGTATCTGAACATGCTGTCCAGCTCAGAGAGTATGAGGAAAAAGATCCTGAGAAATGTCTCCCAGTGCTCCTGCTGATTGAGGACTGTGACAAAGAATACCTTGATGAGCTGAGGAATGAATTAGAGTTTGCCATCAACACTAAGAAAATCAAACAAGGAACACCTTGCTTCATTATGTTGAGCTGCAGGCGATCCCATAACCCAGAGAAGATGTGCAAAGACTCACCATTGCAGAATGTAGCTGTCACTCACAAACTATCaaaagaagagaagagacagtTTGCTGGGAAACGACAGAAGCTTGAAGAACAGTACCAGCCAGAATTCATTTTGACATTCGTCTTGATGAGTGAAGAATTTGAACACCAGAAGATTGTTGAGTATGTTGCGCAATTTGTGAAACATCTGCTGCAAGACATTGATCATGAAGCGGTTGTCACTCGGCTCATTCGGTATGTGGCATTGCTCAACACTTATGTTCAGAACTCATTCATTTCCCAGTCCCATTGCGAAGCTCTGCTAGTATTCACCATTCATATGGATCGATTCCGCCAGCATGCTTTTGAGAGATCACTGAGTGAGCAGGCCAAACTTGTCTTTATACATCTGAGAGATGACAAGACGCACATTGAATCAGTTCGAATCATTCATCCACTTGTTGCAAAGGAAATCCTTCAGCAGCTCCTTGGTGACCAAAAACTGCAAAGTGGGTTGGCCATGGATCTTCTCCACGAGGATGTGCTTTTTGAGCACAGATTTGGAAAAGAAGATTATGGGAAGTTCCTGCGAGCCCTGTTCATGAGACGCTGCAGAGTAAGTAAAGGTGATGAATCAAACagctttttctctcctctcattgAACATGTGAGTGAAAAGGAAACCCCTGACAAGGCAATCGAGCTCctcaaggaggcatacaaacgcTTCAACAAAGATGCATTCTTTGCTCAGCAACTTGCTCGCCTGAATTACTCCCATGAGAAGTTTGAAGAGGCAAAAGATTGGGCGGAGATAGCAGCAAAACAAATGCCTAACAACTCTTACATTCTTGACACGAAAGGccaggtatacagaagatggttcAACGCCAAGTGTAAAGCAATTGAGAAAGTACCAAAAACGGCAGAAAATACAGCAGACGCTGTTGAAACTGCGCTGAAAGCAATGGAGTGTTTCAGAGAATGTGAGAAATCTGCTATCTCGGACCTTGAAAACATGAACAACAGTGGCTTTTTTGCTGCAGTTGAAGTTGGCTGCAGTCTGTTGAAGCTCGTATTCTCATTGCGTGTTTTCTCAAGCAAAACGTATGGCCATTCAGAATGTATGAAGTACCTTCTCACTGATTACATTCCTGAGGAAGTGAAGAAGCCCTGGGAGAATTTTCACATCAATTTGAAAGGCCTTCAAATGACACTGCATGAAGCCCTGGAGTGgatctcggaggacctgagttaCTTCCAGACAGACATCAGTGCAGATGAGGAGGAGACAATTGAAAGCTCTGAGATGAAAATAAGCCATCCAATGACATGGTTGGTAAGAAAATCCTCTGAGTATGGTAAATATTTCAGTGATGCCTCAATCAGCATTGCCCCAAAGCTGTGCCAGTTGAACCCTGGCAGTTTAACTCCTTTCATGAAACGCATGATCATTTACCGGCTTGGTGGGGGGAATATAACTTCAATCTTCTCCCTTCTGACTGACCAGAAAGAAAGAGACCAAGTCAAAGTCCTAGAGAATATCATATCGCTCTACCCCAGCAACCCTCTGATGGCCAGGCTGGATCAAATGGATCTTGTCAATTACATAGCAGCTCATATTGCTCTGAGTTGCCTTACAACCCAATCTCCAAAGTTGGCTGCTCTGAAAGACCTTCAGAAACTCAGTCAGCAGTTCCCAAAAGAGAAACGGAAGTGCCTGTCCAGTGCTCTGTTCCTGCTCATCTTGCTCTTCTGGCCAGAAGATCATGACACAGACCCTGAAAAAGAGACCAAATACAACATTGTTCTATCAGCTGTTGAGTACCTCAAAAGGAGCTACTGGACCAAAATGAAGGATATACCACAAAGGAAGAAAAGGATTTACACCCACTTTTTCCTTAGTAATGGAAGTGGGTGGGACAAGATTGTTCACAAAAGCAAGGTTGAAACGATTACAAAGATCCTCTCCATCTCAGAAAAGAGAATGAAGTGGTTCAGTGGGGAGGTGTGGAAAATGCCAGAGATGGCAAAACTTCTCAGGACTGTGTCTGGGTGGACAGAAGATGGGATAGTGTACCTTGAAGGCCCAAAAGAGAAGAAGTTCACTATTCCTCATCTGAAAGCAGCCTCTGTGCCCTATGGCAATGAAAACATCACATTCTACTTGGGGTTCACATTTAGAGGACCTGTTGCGTACAACGTCACTGTGAAAAAGTAGGGTCGCCACTTAGACAAATCCTGCCAGAAAAGGAGTCTTATGGAATATCTCCTGAACATTTTGGACCAACATACCAATGAATGAGTATGTTTTAGAGCGCATTGTCAGaggaagactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacaaaattCAGTTTAGTGTCTTAAGAATGAATTAAATTCTGCctgtaaaaaaatatttcacaAGGCAAATTGTATGGATATTTTGCATACCGTAAGTGTAAAGTTATTTCTGTTTGAATGCTTTGTTGCAAGTTTTCAACCATTATGTTGACTGAAAATATTAAGGAATGTGTTGTCAAGTTATGAAGTCATgatctgtttttgtttgttgaatactgtatatattttttatattaaaTCTTGTCTTATGCAGGAAGCCTGTGTAATATTATATGTATTGTGCCCAAAATGTGGTATTTGATAACCAACTACTTTGTACTTCTCTTATTCATTTTAATGATAGTTTTCCCAGTGAAATGGCCCCTTTATATAGGATTTTCACATTTGATGTATTTTTTTCTAACCAGTCTTAATATTGTCTTTTTGTATGAAGAATGACTAGTTCAAAAATGGAGTTATGCCTAATAAAGTTGCCTtgacttttttgtttgttttgaatgGTTGTGTGACTGTTTCTTTTAGCAAATGTGTGAACAATGCTAAAATAGTAACATGAAATTCACTCGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354319 lncRNA upstream 25692 54427602 ~ 54433146 (+) True LOC110538772
TU1354345 lncRNA upstream 86236 54370612 ~ 54372602 (+) True G1187532
TU1354336 lncRNA upstream 110588 54348002 ~ 54348250 (+) True G1187524
TU1354280 lncRNA upstream 188939 54269319 ~ 54269899 (+) True G1187486
TU1354239 lncRNA upstream 261300 54192088 ~ 54197538 (+) True G1187452
TU1354390 lncRNA downstream 131343 54602241 ~ 54602568 (+) True G1187571
TU1354389 lncRNA downstream 139946 54610844 ~ 54612914 (+) True LOC118938328
TU1354399 lncRNA downstream 177660 54648558 ~ 54648781 (+) True G1187579
TU1354402 lncRNA downstream 186808 54657706 ~ 54658404 (+) True G1187582
TU1354403 lncRNA downstream 189387 54660285 ~ 54660565 (+) True G1187583
XM_036941523.1 mRNA upstream 3663 54427565 ~ 54455175 (+) False LOC110538772
XM_036941524.1 mRNA upstream 3663 54427565 ~ 54455175 (+) False LOC110538772
XM_036941521.1 mRNA upstream 33196 54385505 ~ 54425642 (+) False tex2
XM_036941522.1 mRNA upstream 33196 54385505 ~ 54425642 (+) True tex2
XM_036941519.1 mRNA upstream 158473 54274551 ~ 54300365 (+) False axin2
XM_036941532.1 mRNA downstream 94390 54565288 ~ 54592971 (+) False LOC118936451
XM_036941530.1 mRNA downstream 97912 54568810 ~ 54592971 (+) False LOC118936451
XM_036941529.1 mRNA downstream 98678 54569576 ~ 54592971 (+) False LOC118936451
XM_036941531.1 mRNA downstream 102202 54573100 ~ 54592971 (+) True LOC118936451
XR_005035603.1 mRNA downstream 128443 54599341 ~ 54613436 (+) False LOC118938328
TU1354165 other upstream 158525 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 193810 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 260823 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 264700 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1009122 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 522776 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 522776 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 522776 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 650363 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 869826 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile