RNA id: XM_036941531.1


Basic Information

Item Value
RNA id XM_036941531.1
length 3397
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC118936451
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54565288 ~ 54592971 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgactccctctgcaactggatcctagacttcctgacgggccggccgtaggtggtaaggaacAAACTACTTCTCACCATTCTTAGTTTGCTGCCATGACATCAAAAGAGGATGCTGCTGAGTTTGTGGATAGACACAGGGCTGAGCTCATCCAGAGGGTTCGCAAGGTGATGCCCATAGCAGATGATCTGCTCAGAAGGGGCATGATCCAATATGAAATGTTTGCTAATATTTCAACTTCCAAGACCAACCCAGGCAAGATGAGAGAGGTGTACAAAGCATTGCAGTCAGGAGGGACACCACTTAAAGCAGCCTTCTATAGGATTCTGCTGAAAAATGAACGTCTTCTGGTCATCAATCTGGCTGCTGAGTTTGTGGATAGACACAGGGCTGAGCTCATCCAGAGGGTTCGCAAGGTGATGCCCATAGCAGATGATCTGCTCAGAAGGGGCATGATCAATCCTGAGGTGTACTCTAATATTCAAACTGCCAATACCAGCCAGGACCAGATGAGAGAGTTGTACAAAGCCGTACAGTCAGGAGGGCCAGAAGTTAAATCAGCCTTCTACAGGATTCTGCTGAAACAGGAACCTCATCTGGTCATCAATCTGGaggaaGCTGTTAGAGATCTAGAAGATGGTTTGAACATTGGAGAATCTTCTTCAGGGAGCATTGCATTGGAAGGTCCTGCATTACCTCCTGCCTCCAATATATTTCCTGGGACTGGAGGAAAACCTGCTGCACTTGCATCAGACGAGGAATCGGTTGGAAAGATCACATACTACACCAATAACCATCTTGGAAAAGGTGCCGATGGAATTGTGTTCAGGGGTTACTTCCATTGTGATGATGCCAACAAGCGTCCTGCGGCAGTGAAGAGAATTGAACTAGCAAAACAAAGCAATGCTGATCGAGAGGTCACTTTGCTTCTTCAATTGGATGACAATCCCCATGTCGTCCGCTACTTCTGCACTGAGAAGGACAGGCAATTCCTATACATCGCCATCGAGCTGTGTGCCTTCTCTTTAGATAAGtgttttactaaaGAAAATCCTTTTGACCTTCGCGGACTGAACCCAGTGATGCTGCTGCAGCAGACCATGATAGGACTGGAACACCTGCACTCTCACAACATAGTCCACCGTGATGTGAAGCCCCACAACATCCTGTTGAAAGACCATTCTGACTCAGTCACGGTCAAGATCTCAGACTTTGGGATGAGTAAGCAGTTAGCGGACAGCAGACAAAGCTACAGCATGAGGTCGGGAGCCCTTGGTACCATGGGCTGGAATGCcccagaggtcctggatgacagcaGGAAAGTAAACCCTACCAGTGCTGTGGACATCTTCTCTGCCGGCTGTGTGTTTTACTATGTGTTGACAGGAGGCAAACATCCCTTTGGAGAACCCTATCGGCAGACTGCTAATATCATGGATGGCAAATACAACCTTAACGGATTACAGAAAGACAAACATGAGGACATCGTGGCCACAGACCTGATAGAACAGATGCTGAGCATGGAGCCCCAGAGGAGGCCTTCTGCTGAGAGCGTGCTCAAACACCCCTTCTTCTGGAGCCTGGAGAAACAACTGATGTTCTTCCAGGACGTGAGTGACAGAATTGTAAATGAGACATTGGATGGTCCAATCATACAGCAGCTAGAGTCAGGGGGACAGGAAGTGGTGAGAAATAACTGGATGGAACACATCACAGCAGTTCTGCGGAAAGATCTAGAAATACGTAAAGGAGCATATGAAGAGGGCTCTGTTAAAAGTCTTCTACGTGCCATAAGAAACAAGAAACACCATTACCACGATTCTCCTAAGGAGGTCCAGGAGACTCTGGGCTCCATCCCTGATGACTTTGTCTCCTACTTCACCTCCCGCTTCCCCCACCTGCTGCTGCACACCTTCCTCGCCGTGCGTTCCTTTGCTGAGGAGCTGACTTTACAACATTACTACCTCAAGTCCAACACGAAACTTAGACGGCAGAAGAGAACACACCCAGAGCCTGACGTGACGACAACCAAGCCAACAACTAAAAAAATGTGACCATAGTGTGAAGACATAACATTACTACCTACCATAGTGTGAAGTCAGGCGCTCCGCTGAGAAGtactcccacacacacagtacatcccACACCAGCAAACCTCCAATCTATGCCAGTACACTGTAATGTCACGGTTCTTTTTACATGAACAATAGTGGTTTGTCTGAAGAAGAAGCAATCACTTTCACTTGTATGCAGATGACACTGTTGTGTATGCTATTTCACCAATGGCTGACCAGGTTCTGTCAGAGCTTTAATCTGCctttattgtcttgctgaaagccTTTATTAACTGAAATTGTTACATAATTAATGCAAGGTAAAACCaagtatatattatattccaaATCACCTAAAAAATGTATCTGATGATTTATGTATACGTACATTGGATGGTGCCCTCATTGATTATGTCCCCAACTAATAAATATCTAGGCATCTGGATTGATGATAGTCCTTCAAAAAGAATGTTGATGAGTtcgttaaaggtgcaatatgtagAAATCACTCTGCCATTCCTGGTTTCTTAAATTgcaatagtttgcctaatttcagtttgacaAAACaagtaatatagtgtagagaatcattgcacCATCTAAACTGTGGTGAAATATCTCTTCAATAGTAAGAATATTGTATTTCCaggtgtttgaagctggtgtacaaaactgacaGTAAAAGGAGTAAAAATGAAACTAAAGAACAGGAAGCATataaatagtgcacatagaacatctACAGCTTGTTAGACTTGCTGTCAATGGGAATGACAGATcgataactcacatttctatgtgaatttggtcaggtcgcctaaaaagtgacatattgcagctttaaaatgTGAAGGTAGTCCGAAATGAGTATGATTATCTTGTATTCTTTGTTTATTGAAGAGGGTTCTGTTCATTTCCTGGTCTGAGAATTGATGGGCAAGCAGTGGTGCGTTCGACTGCATAGTTATTGAATGGGACGGGTAATGTGGTAGTAGCCTATCCCGAGGGATGTACATGTTTATATCCCAGGTTGTATTAATGCTTAAAGCAGGGGAAGCCCCCTTATTGATATGTGTGcatgtatactgtatgttcaaGTATGTTTATGATCTGAAGACATTTCTATTGTAATTCATGTCTTTTGAATGTTGATTGAGTGTGTGAAATGCCTTGTTTTTATTGGTTAAATGCATTATGGGTAGGGGTATAAGAACCCTGTATTCTCATGGttttagagacagacagggtaagGTCTATTTATTTGATTGTGTAAATAATTGTACAGTTTGCCGGCTCTTTATCCTCACTTTGCAAATAAAAGCCTCACTCTGAGCAGGAAAAATCA

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354319 lncRNA upstream 139954 54427602 ~ 54433146 (+) True LOC110538772
TU1354345 lncRNA upstream 200498 54370612 ~ 54372602 (+) True G1187532
TU1354336 lncRNA upstream 224850 54348002 ~ 54348250 (+) True G1187524
TU1354280 lncRNA upstream 303201 54269319 ~ 54269899 (+) True G1187486
TU1354239 lncRNA upstream 375562 54192088 ~ 54197538 (+) True G1187452
TU1354390 lncRNA downstream 9270 54602241 ~ 54602568 (+) True G1187571
TU1354389 lncRNA downstream 17873 54610844 ~ 54612914 (+) True LOC118938328
TU1354399 lncRNA downstream 55587 54648558 ~ 54648781 (+) True G1187579
TU1354402 lncRNA downstream 64735 54657706 ~ 54658404 (+) True G1187582
TU1354403 lncRNA downstream 67314 54660285 ~ 54660565 (+) True G1187583
XM_036941528.1 mRNA upstream 28832 54457578 ~ 54544268 (+) False samd9l
XM_036941525.1 mRNA upstream 102202 54457555 ~ 54470898 (+) False samd9l
XM_036941526.1 mRNA upstream 102202 54457586 ~ 54470898 (+) False samd9l
XM_036941527.1 mRNA upstream 102202 54458838 ~ 54470898 (+) True samd9l
XM_036941523.1 mRNA upstream 117925 54427565 ~ 54455175 (+) False LOC110538772
XR_005035603.1 mRNA downstream 6370 54599341 ~ 54613436 (+) False LOC118938328
XM_036941533.1 mRNA downstream 6376 54599347 ~ 54613436 (+) False LOC118938328
XM_036941534.1 mRNA downstream 6386 54599357 ~ 54613436 (+) False LOC118938328
XM_036941536.1 mRNA downstream 21066 54614037 ~ 54639742 (+) True LOC110515422
XM_036939767.1 mRNA downstream 62176 54655147 ~ 54655863 (+) True LOC118938094
TU1354165 other upstream 272787 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 308072 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 375085 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 378962 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1123384 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 400703 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 400703 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 400703 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 528290 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 747753 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile