RNA id: XR_005035603.1


Basic Information

Item Value
RNA id XR_005035603.1
length 4097
RNA type mRNA
GC content 0.53
exon number 19
gene id LOC118938328
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54599341 ~ 54613436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTGGTAGCCCAATAGGCAGCGCCCAGTTTGTCCCTAGCGGCATGCCGTCGAAATGTCTCAGTCCAGTTCAACAACAACTTTCCATGTGCGAGGACAAGCGACATTCAATGCATTTTGTGTGGCCTGCCCTAGAGTAAGTCTTGGGGAAATGCATACTTTTCATCTCCTAATTTTCACCCGCTTTCTAATATCCCTTGCTAACGTTTAGCTATGTATGCACTAGGCATACAATTCTAGCTACAGTTTGTTCTAGCTAGCTTGCACACTTCCTTGTTAATGTGTGTAGACTGTGTAACGTTACGTCTGTCAGCTGACAAATAACATCGATAGTAAGTGGTAGGTCCACAATTTGTTGTAGTAAGTCCATAGTTGCCAATTATCCTAGGCGACCGTTTCATATCATTTTTCAGACTTCTACACTGACACACGGGCTCGTCAGCATTTGGAGACAGTTTTTCCCTAACACCTCCCAGATGTCCCAACTCGACACAGGCCATGGGTTTGTCTAGttgtctgtctgccctgtctcTCTCAGCCCTGCTCACCCTGGCCTTGATAACTTGTTTACACCTTAGCTACCTGTCTGACCAAAAGTTGTCACTGATAAAGTTAACTAGCAAACAACAACCAGATGAGACACCAATACACCTATCAGTAAGACCTGGTTTAGAGGAAGATCCAGCAACAAAACAGGCCGGTGAGAGGGAGATAGTGAACCTCCAGAGGGGTAGCACCCATCCAGCCCCCAGCCACAGATTGCTGTGGGAAGGCCCCCATCCAGCCATCTCCAGTGGTCCCAGAGAGGCAGAGTGTAGGAGGGGGGCCCTGGAGAGCCGCTTTGACTGCGCCCGCGACCGAGTTCTGAGCCAGACAGAGTGTCAGGGGAGAGGGTGCTGCTATGCCCCCCTACCTCAAGGCCTCTCTGGAGGACCCCCCTGGTGCTTCTACCCCCCGTCATACAGCGGCTACAGGATGGGGCCCCTCACTCCCACTTCCAGGGGCCAGGCTGCCACCCTTACGAGGCCCACTCCCTCCTACCTGCCCCGGGATATCTCTACGCTCCGGTTGGAGATCCTGGATGAGACAGAAGGCCGACTGCACCTCACGTTGAAGGATCCGTTGTCCCGGCGATATGAAGTTCCTTTATCCACTGCCCAGTCCAGGGGTAACACTGACACCCAGGACCACCAATATGTTACTGAGTTTCAACCCGACCCTTTTGGGATCATAGTGCGCCGAAAATCCAACGGCCGTGTCCTTGTGAACACCACAGTGGCCCCGCTGCTGTATGCTGACCAGTACCTGCAGCTGTCCACCTCCCTGGCCTCCTCACTGGTGTCTGGGCTGGGGGAACACTACACCCCCCTCAGCCTGGACCTCAATTGGACCTCCCTTACCCTTTGGAACAGGGACATGGCGCCCCACGGCGATGCCAACCTTTATGGCTCTCATCCGTTCTACATGGTGCAGGAGGGGGATGGACAGGCTCACGGGGTCTTCCTGCTCAACAGTAATGCCATGGAGGTGGTGCTGCAGCCTAGCCCTGCTCTGACCTGGGTGGCTGTGGGAGGAATCCTGGACCTGTACATCTTCCTGGGCCCTGACCCTCAGAGTGTTGTCAGACAGTACCTCCAGGTTATAGGGTACCCTATGATGCCTCCTTATTGGTCACTGGGGTTCCACCTGTGTCGCTGGGGTTACCGGTCCACTAACGCAACCCGAGAGGTGGTGCGACGCATGCACAACGCCAACTTCCCCCTGGACGTGCAGTGGAATGACCTGGATTATGCAGACAAGCGTCGGGTGTTCACCTTTGACCCCCAGCACTTTGTGGACCTGCCAGACATGGTGAAGGAGTTCCATCAGAAGGGCATTAAGTACATTCTCATCCTGGACCCTGGGATCAGCAGCACCAGCCCCCCTGGTACTTACCCACCCTTTGATGAGGGTCAGCGGAGAGGGGTCTTCATCAGGAACTCTACAGGACAGACACTCATAGGGAAGGTGTGGCCTGGTCCGACAGCGTTCCCTGACTTCACCAACCCAGAGACACAGAGCTGGTGGGAGGACTGCATTCGGGAGTTCCACTCCAGAGTCCCGCTAGATGGCCTGTGGATTGATATGAATGAACCAGCCAGTTTTGTGCAGGGCTCTGTGGAGGGGTGTCCTGACAGTGATTTGGATAGCCCCCCCTACGTGCCACCGGTGATTGGAGGACAGCTGAACACTGGTACACTCTGCATGTCAGCTCAGCAGAACCTGTCCACTCACTACAACCTGCATAACCTCTATGGGCTGACGGAGGCTAGCGCCACCCACAGTGCCCTGGTGAAGGTCCGGGGGTCGCGACCCTTCGTGCTGTCCCGCTCCTCCTTCCCTGGCATTGGCCGTTTCTCCGGAGTCTGGACGGGAGACGTGAGGAGCGACTGGGAGCAGCTCAGATACTCCATCCCTGCGGTGCTGCTGTTTGGCCTGTTCGGGGTGCCCCTGGTGGGGGCGGATGTGTGTGGGTTCAGGGgggacaccacagaggagctgTGTGTACGCTGGACCCAGCTTGGAGCCTTCTACCCCTTCATGAGGAACCACAACGACAAGCCCAACGCTGTGGGTCCCCAGGAGCCCTATGTGTTTGGTCAGGAGGCCCAGACAGCCATGCGTAGCGCGGTGATGTTACGTTACTCTCTCCTGCCGTTCCTCTACACACTCTTCTACCACGCACACACCTCCGCAGACACTGTGGCCACGCCTCTCTTCCTCCAGTTCCCCTCGGACCCTAACTGCCAGACCATAGACAGACAGTTCCTGTGGGGGAGTTCTCTGCTTGTCAGCCCAGTGTTAGAGCAGGGGGCAGTGGAGCTGGCTGCCTACCTCCCCCCGGGGACTTGGGCCAGCCGTTCTACAGTAAGGGTCAGTACCTGCTCCTCCCAGCGCCTCTGGACACCATCAATGTCCATGTGAGAGAGGGACACATCATCCCACAGCAGGAGCCAGGCCTGACTACCTCAGCTTCTCGCAGTAACCCTTTCCTCCTGACGGTGGCGCTGTCTGCTGGGGGCTGGGCCTGGGGTGACCTGTTCTGGGACGACGGGGACAGTCTGGACACCTTCCAGAGAGGAGACTACTCCTATGTTATCTTCATCGCTGGACAGTCCCAGGTGATGAGTGACCCCCTGCGTCAGAACGGGGCGCTGGACGGGCTGGTGCTGGGAGGGCTGCGAGTGTTCGGGGTGCCTTCCCCACCCCGCTATGTATGGGCCAATGGAAAGAAAGTGTGGGATTTCTCTTATCAGACTGACACCAAGgttctgACACTGACCAGCCTGGCCCTGCCCATGTCAGAGGTGTTTGAAGTCCTGTGGACCTTGTGAGCTTTATGAACTGTATGACTCAGTGGACTCTGGCCCAGTAGACAGCTTCTCAGGTGGTTCTAGAACTCCTGAACTAGCACATCTCTGACAAAAACCTCCACTCAAAGTTTCCCCTCAATCACTGCTACCCTGGATAAGACATTGCTCTAATAGACTCCTGGGTTTCTGAATGGACAGACTACACTGAAGAATTTTTGGAAATCATGTTTTTATATTCAACTGTATTTTCAATAAAATGATGTGAACTGTGTGGGTTAAAGCTCCATCAGATATCTCTCCATTTCCTTGTTGTTGCAGATGAGTGATTACATGACATTGTCTCAGGTGAGATTCTGAGACAGTGGTGTGAATTTGAGAATTGTGGTCATTCTAGAACACTAGGCCAAAATGTATTGTTGTTTTACTATTTTAATTTGTctataagaatatataaatatttttaaaatatatttctaaccttttattttatttgttaagcACTTTTGAAATGCATCACCTGTAAGAAATGTTCTCTATAAATAGCATTTGATTAATTGATAAATATTGTGCTGAGGAGGACAGCAGTGGCTCTACACAATTATTTTTATTAATTGAACATTAAAATTGACCAGAATATGCCCATTCTGTACTCTTCTAGTATGATGGTAGGCTCTGTGTTAAGTCTCATCAAATTACTTCCAGTGATATTGCCACATTGTTACCATTAAAGGCAATTGATAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354319 lncRNA upstream 166195 54427602 ~ 54433146 (+) True LOC110538772
TU1354345 lncRNA upstream 226739 54370612 ~ 54372602 (+) True G1187532
TU1354336 lncRNA upstream 251091 54348002 ~ 54348250 (+) True G1187524
TU1354280 lncRNA upstream 329442 54269319 ~ 54269899 (+) True G1187486
TU1354239 lncRNA upstream 401803 54192088 ~ 54197538 (+) True G1187452
TU1354399 lncRNA downstream 35122 54648558 ~ 54648781 (+) True G1187579
TU1354402 lncRNA downstream 44270 54657706 ~ 54658404 (+) True G1187582
TU1354403 lncRNA downstream 46849 54660285 ~ 54660565 (+) True G1187583
TU1354404 lncRNA downstream 48389 54661825 ~ 54662314 (+) True G1187584
TU1354405 lncRNA downstream 59123 54672559 ~ 54672973 (+) True G1187585
XM_036941532.1 mRNA upstream 6370 54565288 ~ 54592971 (+) False LOC118936451
XM_036941530.1 mRNA upstream 6370 54568810 ~ 54592971 (+) False LOC118936451
XM_036941529.1 mRNA upstream 6370 54569576 ~ 54592971 (+) False LOC118936451
XM_036941531.1 mRNA upstream 6370 54573100 ~ 54592971 (+) True LOC118936451
XM_036941528.1 mRNA upstream 55073 54457578 ~ 54544268 (+) False samd9l
XM_036941536.1 mRNA downstream 601 54614037 ~ 54639742 (+) True LOC110515422
XM_036939767.1 mRNA downstream 41711 54655147 ~ 54655863 (+) True LOC118938094
XM_036941537.1 mRNA downstream 87669 54701105 ~ 54710557 (+) True LOC110486813
XM_036941538.1 mRNA downstream 104174 54717610 ~ 54720302 (+) True LOC110486816
XM_036941539.1 mRNA downstream 107225 54720661 ~ 54731365 (+) True LOC110486811
TU1354165 other upstream 299028 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 334313 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 401326 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 405203 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1149625 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 380238 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 380238 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 380238 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 507825 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 727288 55340724 ~ 55366316 (+) True LOC110539040