RNA id: XM_036939769.1


Basic Information

Item Value
RNA id XM_036939769.1
length 1606
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110486825
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54741479 ~ 54748709 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGCTCTCTATGAGTCTAAGACCGAGCTCTGGGACCTGGACATCAATGTGATCCAGCCAGAAAGGAAAGGTCCAGATACAGCCACAGATGGAAACAGCAGTACCGAGTCGTTCAGGGATGCGTTCCAACGTTATATCCAGCCCTGTCTGGCAGAGCTGCTGGGTTCATCTCTGTTTATCTTTGTGGGGTGTCTGTCTGTGATCGAGAACACAGAGGGCACCGGAAGGCTGCAGCCGGCCCTGGCACACGGCCTGGCCCTGGGCATCGTTATCGCCGTGCTGGGGGAGATCAGtgggGGCCACTTCAACCCagcagtgtctgtgtctgtgtttctgatcgGGGGTCTCAACATCATACTGCTGGTCCCCTACATACTGGCTCAGATGTGTGGAGGGATGATAGGGGCAGGACTAGCCAAGGTGATTTCCCCATCCATGAACTATGCCAAAGTTTCAGGGGCAGCATTCGACACAGTGCAGGCCGACACCCAGATAGTACCAGCCACGGTGGCAGAGGTGATCATGACTCTGTTCCTGACGATGGTGGTGTGTATGGGGGCCGTGAATGGACGCACGCGCAGCCTGTTGGCCCCTCTCTGCATCGGGCTGACCGTGACCGCAGACATCTTGGCTGGGGGAGCAGTGTCTGGGGCATGTATGAACCCAGCTCGTGCCTTTGGCCCGGCTGTGGTGGCCGACTACTGGAGCTATCACTGGATCTACTGGGTGGGACCCATGTCTGGAGCCCTGCTAACCGCCAGCTTCATACGACTACTGCTTGGGGATGAGAAAACCAGAGTTATCTTGATGTGATACAGATGTAGGTTTCCAGTTCAAGTCCATAAAAAAGTCAATTTCCAAAATCCACATAAATTCTAACAGTAtttttgtgttactatttccatGTCTCTTAGTTTAAAATAATCTTACCAATGTAACTTTATTCTATACCGGTATATATAGATGATCTATTGTCCATAAATGCAATCTATTTTATTCAATGCCATTTGTATAAACACATTTTGTACAGTAAATATTgcattgtatatttttttttatgattgATCCCTTTTGACATAGTAGAAGTGACTTCTGGCCCATAGTCTGTGTTTTATACCGCCACCTTTTGGTTATGTGGTGAACTACAGCCTTGCATTGGTCTGACTCTCACTGTACTGTGATACAGACTTTCATATGCGTCATGCCTTTTCACTGATTATCTGCACACAGACATCCAAAAACTAGCCACATTAGATAACATTGAATTTGACACTGTAATTGCTATCTTGACTGAAAGTctcagccatagaaatataattactaggaAGGACATAGCCCCTCAGACAACCGGTCCTCCCATTATGGACTCATTGACTTGAACGGGGACCTCtcttctagtaattatatttctatggcagaCACTCATTGGAGACAGTAGTATGTGAACGTTCAAAAAATGTTGCAGTGAAGATTCAAGAAATGAAGTATAAATGTGTACAGCAGAGGAGTGTCCATTTATTGATTTGTACGTTGGAAATATAGAAGATGCTGTTTCTTTCATACGCAATTAATACAAATGAATTATTAAATGAATTCATGAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355121 lncRNA downstream 50021 54689825 ~ 54691458 (-) True G1188204
TU1355115 lncRNA downstream 84313 54656870 ~ 54657166 (-) True G1188198
TU1355114 lncRNA downstream 92583 54648283 ~ 54648896 (-) True G1188197
TU1355106 lncRNA downstream 130964 54608498 ~ 54610515 (-) False G1188189
TU1355164 lncRNA upstream 13324 54762033 ~ 54762940 (-) True G1188232
TU1355168 lncRNA upstream 16856 54765565 ~ 54767157 (-) True G1188235
TU1355189 lncRNA upstream 52240 54800949 ~ 54802533 (-) True G1188252
TU1355196 lncRNA upstream 55245 54803954 ~ 54805755 (-) True G1188256
TU1355146 lncRNA upstream 60909 54809618 ~ 54833652 (-) True LOC110486827
XM_036941540.1 mRNA downstream 756 54736714 ~ 54740723 (-) True LOC118938329
XR_002475811.2 mRNA downstream 314028 54426436 ~ 54427451 (-) False LOC110538769
XR_005035602.1 mRNA downstream 314030 54426436 ~ 54427449 (-) False LOC110538769
XR_005035819.1 mRNA downstream 315075 54426263 ~ 54426404 (-) True LOC118938612
XM_036941514.1 mRNA downstream 691887 53806640 ~ 54049592 (-) False si:ch73-374l24.1
XM_036941548.1 mRNA upstream 64413 54813122 ~ 54831352 (-) False LOC110485228
XM_036941552.1 mRNA upstream 84401 54833110 ~ 54862652 (-) False LOC110486827
XM_036941549.1 mRNA upstream 84401 54833110 ~ 54889445 (-) False LOC110486827
XM_036941550.1 mRNA upstream 84401 54833110 ~ 54889445 (-) False LOC110486827
XM_036941551.1 mRNA upstream 84401 54833110 ~ 54889445 (-) False LOC110486827
TU1355100 other downstream 141030 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 270641 54465533 ~ 54470838 (-) True G1188127
TU1355055 other downstream 291459 54448883 ~ 54450020 (-) True G1188147
TU1354775 other downstream 930722 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1354707 other downstream 1103666 53607024 ~ 53637813 (-) True mosmoa
TU1355147 other upstream 75203 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other upstream 75203 54823912 ~ 54831322 (-) True LOC110485228
TU1355395 other upstream 273939 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 274301 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 462790 55211499 ~ 55212715 (-) True LOC110516592

Expression Profile