RNA id: TU1355147


Basic Information

Item Value
RNA id TU1355147
length 759
RNA type TUCP
GC content 0.52
exon number 8
gene id LOC110485228
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54813122 ~ 54831352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAACATACACCATGAGAACTGCTATAGGACCGGCCAACTGGAATTAAACCCTGAGTCTGACTACAAGCTGACAGAATACGCAATCACTCCCTGAGAATTCCAGTGACCTTTGACCCAAGTATGGCTACCACTCAGGGGACCACCGTGCCCCCCTCCCAATCCCCAGGTTTAGGTGTACCCACCCTGGTCACCATAGACATTGTGGTGCTCGTTGTCTACTTCCTCCTTGTACTGGCTGTGGGCCTCTGGTCCATGTGGAAAACCAAGCGGAGCACGGTGGATGGATACTTCCTGGCAGGAAAAAGCATGTCCTGGTGGCCGGTGGGCACCTCTCTGTTTGCCAGTAATGTGGGTAGCGGCCACTTCATGGGCCTGGCAGGCTCAGGAGCTGCAGCGGGCATCAGTGCTGTGGCATATGAGTGGAACGGGATGCTGATGGTGCTGCTCTTGGGTTGGCTTTTCCTGCCCATCTATATCGCTTCCGGGGTGACAACCATGCCTGAATACTTGCAGAAGCGATTCGGGGGGAAGCGAATACAATTATTCATAGCTATTTTGTATTTATTCATTTACATCTTCACAAAGATATCGgtggatATGTATGCTGGGGCAGTGTTTATTCAACAGGCCCTGCAATGGAACATCTATGTAGCTGTGGTGGTGCTTCTGCTCATCACTGCTCTCTACACTGTAACAGGTGGTCTGGCTGCTGTCATGTACACAGACGCTGCCCAGACTGGCATCATGTTGATAGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355201 lncRNA downstream 6398 54816985 ~ 54817514 (-) True G1188259
TU1355198 lncRNA downstream 7446 54814810 ~ 54816466 (-) True G1188257
TU1355196 lncRNA downstream 18157 54803954 ~ 54805755 (-) True G1188256
TU1355189 lncRNA downstream 21379 54800949 ~ 54802533 (-) True G1188252
TU1355168 lncRNA downstream 56755 54765565 ~ 54767157 (-) True G1188235
TU1355213 lncRNA upstream 14138 54845460 ~ 54848306 (-) True G1188270
TU1355218 lncRNA upstream 22783 54854105 ~ 54854476 (-) True G1188275
TU1355225 lncRNA upstream 37245 54868567 ~ 54873998 (-) True G1188281
TU1355260 lncRNA upstream 100402 54931724 ~ 54974451 (-) True G1188311
TU1355277 lncRNA upstream 144874 54976196 ~ 54976771 (-) True G1188327
XM_036939769.1 mRNA downstream 75203 54741479 ~ 54748709 (-) False LOC110486825
XM_036941540.1 mRNA downstream 83189 54736714 ~ 54740723 (-) True LOC118938329
XR_002475811.2 mRNA downstream 396461 54426436 ~ 54427451 (-) False LOC110538769
XR_005035602.1 mRNA downstream 396463 54426436 ~ 54427449 (-) False LOC110538769
XR_005035819.1 mRNA downstream 397508 54426263 ~ 54426404 (-) True LOC118938612
XM_036941552.1 mRNA upstream 1788 54833110 ~ 54862652 (-) False LOC110486827
XM_036941549.1 mRNA upstream 1788 54833110 ~ 54889445 (-) False LOC110486827
XM_036941550.1 mRNA upstream 1788 54833110 ~ 54889445 (-) False LOC110486827
XM_036941551.1 mRNA upstream 1788 54833110 ~ 54889445 (-) False LOC110486827
trnaa-ugc-61 mRNA upstream 24213 54855535 ~ 54855610 (-) True trnaa-ugc-61
TU1355133 other downstream 75254 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 223463 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 353074 54465533 ~ 54470838 (-) True G1188127
TU1355055 other downstream 373892 54448883 ~ 54450020 (-) True G1188147
TU1354775 other downstream 1013155 53806644 ~ 53810757 (-) True si:ch73-374l24.1
TU1355395 other upstream 191326 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 191688 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 380177 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 603494 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 603819 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile