RNA id: XM_036941552.1


Basic Information

Item Value
RNA id XM_036941552.1
length 7383
RNA type mRNA
GC content 0.51
exon number 19
gene id LOC110486827
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54809618 ~ 54889445 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctccccttcgctgtctctctctctctcctctgaaacAGTGCTGGTTCTTCTAAGTCTCTAGCAGCCTCGCTGTCTCTGACTGTGGGTCTGACCATTGCCAGTAACAGAATAGTGTTTCAAGTTATTATTTATGTTTGCCAGAATCTTCATCCCCAAAAAGCACCGGGAGCGCTTCGATGATGTTGTGTCCCAGAGCCTAATGGGCCGGCTCAAAGGGCGGAGCTTCAGCGACCCCAGCCGCAACCACCTGCGCCGAAGCCGCAGCGAGGACCACCCGGAGCGACTGCTGGTGTCCACTCGGGCCAGCTCTGTCCCCCGAACGCATGCCGAGGAGGGCGTGATGCCCCCCATCCGTGGCCTCAGGAAGACCACCTCACTCACCGCAGGGCACGCTGGCAACGCTGCAGCCCTTCGCAGGACGGTGAGAGTCTGCAAAGGGAACCTAAGTTTTGGATTCACCCTCAGGGGCCATGCACCTGTCTGGATCGACTCAGTCATCCCAGggagtCCAGCAGATAAGGCGGGGCTCAAACCTGGAGACCGCATCCTGTTCCTCAATGGACTTGACATGCGGAGTTGTTCCCATGAGAAGGTCGTCTCCATGCTACAGGGCAGCGGTGCCATGCCCACCCTGGTCGTGGAGGAAGGCCCCCCCACCTTCACGCTAGCCGAGCCAGAGCAGCCAGGAGGGCCAGGTAGGGCGTCCCCGGGTGGAGGCGTGCCCCGCTCCCCAGTGCTCAACTCCCTGCAGTGGGTGGCTGAGATCCTGCCTCCCTCTATCAGGGTCCAGGGGCGCACCTTTGGACAGCAGCTGGAGCACCTGCTCACCATCCAGGAGAGATACACCATCTGCAAGGCCCTGGAGAGCTTCTTCCAGCatagGAATGTTGACACTCTGATTGTGGACGTGTTCCCGGTGTTGGACACGCCAGCCAAGCAGGTGATCTGGCGGTTTGTCTACCAGCTTCTGACCTACGAAGAgcaggagcactgccagagcaagATTTCACGTTTCCTCGGTTACAAGGCTGCAGCGCCAGCCCCCCCACCTGAGCCAGAGCCCGCCCCCGAGCCCCATCGCCGTAGCAGCTCCATGAGAGTGACAGGAACCGCCTACAGGGCCAGCATGCGTGGGCGGAGCTCTGACGACCTCATCATCGGCACTCACCTGGGGATGGGGATCCGTACTGATCCAGTGGAGATGGGGATGAGGCTGGCTccaggagagagacagtcaggagACGGGACGTCCCTCCCAGAGACCCCCAACAACCTCACCAACctgtctgCGGTGTATGCTGAGCTGGAGAACGTGTACTCAGGGAAGAGGTCCAAGTCTCTGAAGGCTCGCGCTCCTCCTCCGGCGGACAGTCTGGTAGAGCTGGAGGTCCTCGAACACGCAGGCTCTCCGTCCATGCACGCTAACACAGGTAGCCGTAAGGGccccccaccacctccctccGCCTGGCAGGAGCCCCTCCCTAGCCCCCCTGCCCCGGTCCAGTTCTACCCCCCAGGTCTCACCTCCCAGACCAGTGCCGAGTCTAACCCCTACATCAGCCTAGACAGCCCCCCTCCCTCGCCCCCCGACTACCCTGCCAGCCCACCCTCCCACGCCCGTCTCAATAAGAGGCGCTACACTTTCTCTCATCCGCCGCGCTCCTCTGATACAGACCGGTTCCTGGACGCACTGAGCGAACAGCTGGGTCAGAGGGTCGCCATTGTAGACGACTTCCTGTCACCCGAAAACGACTACGAGGAGGATGTTGTCCAGATGAGCTTCCCagatgatgaggatgaggatgaggaggtggaggtggatgaTGAAGATGGAGATGGGGGTTTCATAATACCCCCTGAGCTGAGCAGCCCCAGCGAGTGCCAGGGCAGCAGCGGAGAGGACGCCTCCTCCCtcacctactcctcctcctccgaaCACATACCCCCTCCCCCCATGACTCCCCCGCCACCTCCGCCCATCCAATTCAAtgatcctcctctacctccaagcTATACCGCCACCCCTGAACAGTCTCCCAGAATGCAACTGCCTTTCCGCCGCCACCACGGGCCACCTCCGCcccctcctcctcgctccaacccACCACCCAAACGCCAGTCCATTCACAAGGTGCTTCCCACCCGGGAGGACCTGCTAGCCCATTCTGCAATGCAGGAACAAAATGCGTACCAGGAGCAACAAGCTTACCAGGAACAACAAGCTTACCAGGACCAACAAACTTACCAGGACCAACAAGTGCAACAAGCGTACCAGGAGCGACAAGTGTACCAGGAGCAACGAGCATTCCAGAAGCAACAAGCGTTTCAGGAACAAAAAGCTTACCAGGAGCAACAAGCACAACAAGCGCACCAGGAGCGACAAGCGTACCAGGAACAACAAGCTTACCAGGAGCAACAAGCACATCAAGCGCACCAGGAGCGACAAGCATTCCAGGAGCAACAAGCACATCAAGAACAACAAGCGTTACAGAAGCATCAATCATATCAGGAGCAACAAGCGTACCAGGAGCAAAGTATTTACCAGGGGCACCAGTCACTGCCTGCCCAGTCCTCGCACAAAGCACACCCTCTGCAGCAGCTTCACCAgtccctgccccccctcccctctccagagGCAGCCCACACCCATCCAGACCTCCCAAACCACCCAGACCCCTCACTCTACCAGATGCACCAAGCTCAACAACAGACTCGTCGTCAGAGCCGTCGTCAGTCTCACTCAGCCACATCACCGTACAATCCCCCAGCCCATTCCCCTGTCCATCCAGATCAACAGAGTCAGTACTCGGAGGCAATCTATCAGAGTATTCATACACAGTCACATCACTCATCCATGGAGCGCCTTCAGCAAGCTCATCAGGTCCAGCAGCACCACTCCTCCATGGAGCTGCTTCACCAAGCTCAGCAGGTCCAGCAGCACCACTCCTCCATGGAGTTCCTTCACCAAGCTCATCAGGTCCAGCAGCACCACTCCTCCATGGAGCTCCTTCACCAAGCTCAGCAGGTCCAGCAGCACCACTCCTCCATGGAGCTCCTTCACCAAGCTCAGCAGGTCCAGCAGCACCACTCCTCCATGGAGTTCCTTCACCAAGCTCAGCAGGTTCAGCAGCCCCACTCCTCCATAGAATTCCTTCACCAAGCTCAACAAGACCAGCAGCACCACTCGTCCATGGAGCTCCTTCACCAAGCTCATCGGGTCCAGCAGCACCACTCCTCCATGGAACTTCTTCACCAACCTCACCACTCATCCACAGAGCTCCTTCACCAAGCTCATCAGATCCAGCAGCACCTCTCATCCACGGAGCTCCTTCACCAAGCTCATCAGATCCAGCAAGATCAGCCTGCATCACTACCAGTACATCTGGATCAGGAGATCCACCAGTCTCTTCAGAGCCATCAGACTCACCCATCTTCCCAGGCCAGCCACCAGGGTCAACAGACTCGTCAATCTCTCAAGTCTCATCGCACTCACCAGCCATCCCCCCAGCGTCCCCACTCCATCCAGCAGACTTACCACCACACTCCCCAGATCCAGCACATCCACCACCAGGTCCCTCCCCAGCCCACTCAGCCAGAGCTCCATCAGATCCACCTAATCCACCAGCCCATCCAGCAGCGCCACCACCCCCAGCCCACCCTGTCCACCTTCCAGCCCCTTCCACCCCACCAGCCCACCCTGTCCACCTTCCAGCCTCTGCCCCAACACCAACCCCACCAAACCCACCAGGTCCACCCCTCCAACCAGGGTCGTCCTCAGTCCCAGCCTTCTCAGCGGCTATTCAGTCAATCCCAGTCTCACcaccactcccactcccaccacCAACCCCTGCCCCAACCTCAGGCCAAGCAGCATTCCCAGTCCCAGAATAACTTGGACCAGTTGGGGAAACAGGAgccccctcctcctccgcccCTGCCCCCTCCTGGAACCCCTCCTCCGCTGCCTCGCCCAGGCCTTCCGAGGATGGACTCCAATCATATGAGTGTAAAGAGGCTGCGCTGGGAACAGGTGGAGAACTCTGAGGGCACCATCTGGGGACAGTTGGGGGAGGATTCGGATTATGACAAACTGAATGACATGGTGAAGTATCTGGATCTGGAACTGCACTTTGGGACACAAAAGAACCCCAACCCAGCCCCTCAGTCGGAGACCTTCAAGAAGAAAGACGTAGTTGAGATTCTGTCCCATAAGAAGGCCTACAACGCATCCATCCTGATTGCCCACCTGAAGCTGTCCCCGGGCGAACTACGCCAGGTGCTGATGACCATGGCCACAGAGCGGCTGGAGCCGACCCACATCAAGCAGTTGCTGCTGTACGCCCCCGATGCAGAGGAGGTCAAGCAGTATGAACAGTACAGCGAGGACCCAGCCAAACTCAGCGAGCCTGACCAGTTTGTACTACAGATGCTGTCAGTACCAGAGTACAAGACTCGTCTGAGAAGCCTCCACTTCAAAAGCACCCTGcaggagaagacagaggagatgaggggcGGCTACGACTGCATCTACAACGCCTCCATGGAGCTCAAGACCAGCAAGAAACTGGCCAAGATACTGGAGTTTGTGCTGGCGATGGGGAACTATCTGAACAACGGTCAGCCTAAGACCGGCAACAAAACCACCGGGTTTAAGATCAACTTCCTCACTGAGCTCGGCACCACAAAAACAGTGGATGGGAAATCTACGTTTCTGCACATCCTTGTCAAGTCACTGTGTCTTCACTTTCCCAACGTCCTGGATTTTGCCAAGGACCTCACCACGGTTCCCCTGGCAGCCAAAGtGAACCAGAGGACCATCACATCTGACCTGAACGACCTTCACACCACTATCCAGGACATCCGATCTGCCTGCCAGAAAATGCCTGCCACAGCAGATGACCGCTTCGCTGCAGTCATGAGTGGCTTCCTGGAGAACATCCACCCAGCACTACAGTCTCTGGAGTCCCTGCAGCAGAGGGCCATGGAGGAGTGGTCCAAGACAGCCTCCTTCTTCGGAGAGGACAGCCAAGCCACCAACACAGAGTCGTTCTTTGGGATATTCACTGAGTTCCTCGCCAAGTTTGAGAGAGCTCTTAGTGAGAACCAGGCCAATGAGAACCCTCCTAGGAGTCCCAGGAGCCCAAGAATGGCCTCACCCCTGGCCTGGTgatcagagagacaggaagaagggttggcaggcaggcagacaggcaggcaggcaggcacacacacactctctatctctctctcacacacacacggacaggaGTGCATGCGAAAATCCAcatacatgcacaaacacacatacacacaaacacacatacacacaaacacacatacacacaaacacacatacacacaaacacacatacacacaaacacacatacacacaaacacacaaacacacatacacacatacacacaaacgcaCTCATAGTATTTCAATTTTTGTAATTCAAGAAATGTATATTGTGGGAATTAGGTTGTCTGCAGAGTTGAGCATACAGGGCTTTAATACGTGACATTGTAGTTTGAATGTCCAGCTAGTTTAACACCTCAAACTTTGTATATTTCATGGCTATAGAGTGTTCCTCTGGAACAGACAAATTAAGCTATACTGGATCAATGGTTTTGCTTTTTATATATTTGTAAATAAAAGTGTTATACCATTTATAGAAATGCAAAGATTCATGAAATGGAATAGGAAAGAGACTGACATCAGTAACTATTTGAACCCAGCTgtctgatatactgtatatgaatgtATGATACAATTATAGGCTAGAAAGATTAAGTCTACAGAACATGATCAGCAATGGTAAACAGAATACTGGATCGTTTTGAGAGACATACAGATCTAAACTATTGTTGCTAAAACATGTATTTGATACTTCAGCAGTTAAAAGAGATGACTGAATGCCTGTGTCAATGTGTCTGATTTGAGAATGAAatgtgtattatatattgtacCACTAAAATATAACTGTAATGATATATGTAATACAGGATATACATATTTAAGTAGTCAAATATGAAATGCTTTACAATaattaacattttttaaatgatttaccTGTTCCATATTTTTGTAAGCCACCCACCACACTGAATGTATTTACAAGTTATTCATTTTGAATGAAGTGTGTCTTGTACGATATCCAGTGGATACTCATTACTACTAAAGAAAAGGAATGTTATGAAAATGAAAACACATTTGTGCTGTTAACTATCTGTTAactatctgttcctctctgtctctgattgTGTTGATACTGACCTGCTGTAAACGGGCAGTGTTCTATTATGAACAGTAGGAGGATTTGTTACGTTTTCATGATCATTTCTGCATACTGCACCTTCACTTTAACCTCTACAATTCAATGAGGGGACACACTACTTTCTTGAAGCACAttacttaaagggatagttcacacaaattagaaaaatgacattttggtttccttaccctgtaagcagtctatggccAAGGTACGACAGCAATCCAAGCTTTGGTTACGTTttcctggcactgtttccacattCTAATGTTTTAGCATATGTGGctcaaatcccattcaagtcatgcgaccgatattagcatttttcatGCATCATGTCCAAATATCCAAGTATCTTAAAttgattgtgaagctcaacaaagtcacttatacagtagatgatatgaaCATGATGCGTGTAAATTATAACATCAGTCCtgtgacttgaatgggatttgtgccacaaatgctaaaatgttAGTAGTGTCAGGGAAACTAAactaaagcatggattgctgtcatacttTGCCCATAGACTGCTTgtagggtaaggaaaccaatatgtcattttgTAATATGGCTGAACTATCCCTTAAACAGTAACTCTGTAGACTTTAATGTCATAGGATGTTAATACTTAACTTCATCAAACCTTGTTTTAACATATCTTTGTCATCTGATACGGACTACTTCTGGACTGATTGTGTAACTGACACATGGATGTTTTCAACCCAAACATGGAGGACATTTTACACattcaattaaagctacactccaGCTTTTCAGACAGTCGTTACATGAGAGAAATAGGACATTCTTTAGAATACAACTACTGTGGATCATTTTAAATGAATAAGATAAGGCAGATGTAAGAAGACGTGCTTATAATGTTATTCAGAACATGTCGATAAGTTATTGCCATCATTTGTTTTCTAACGGTATGATCTTCATTTCTGACTTTGTCGTCTGGATAGCTATACATATTCAGCAATGCGTTCTGGAAGTTGTTGCTCTCGGATAagtctatgttttgtattgtaacaGCCAACGCTGACAAATAAAACGTCTGGTATAAGAACATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355201 lncRNA downstream 15596 54816985 ~ 54817514 (-) True G1188259
TU1355198 lncRNA downstream 16644 54814810 ~ 54816466 (-) True G1188257
TU1355196 lncRNA downstream 27355 54803954 ~ 54805755 (-) True G1188256
TU1355189 lncRNA downstream 30577 54800949 ~ 54802533 (-) True G1188252
TU1355168 lncRNA downstream 65953 54765565 ~ 54767157 (-) True G1188235
TU1355225 lncRNA upstream 5915 54868567 ~ 54873998 (-) True G1188281
TU1355260 lncRNA upstream 69072 54931724 ~ 54974451 (-) True G1188311
TU1355277 lncRNA upstream 113544 54976196 ~ 54976771 (-) True G1188327
TU1355293 lncRNA upstream 129874 54992526 ~ 54992792 (-) True G1188342
TU1355390 lncRNA upstream 136881 54999533 ~ 55002316 (-) True G1188399
XM_036941548.1 mRNA downstream 1758 54813122 ~ 54831352 (-) False LOC110485228
XM_036939769.1 mRNA downstream 84401 54741479 ~ 54748709 (-) False LOC110486825
XM_036941540.1 mRNA downstream 92387 54736714 ~ 54740723 (-) True LOC118938329
XR_002475811.2 mRNA downstream 405659 54426436 ~ 54427451 (-) False LOC110538769
XR_005035602.1 mRNA downstream 405661 54426436 ~ 54427449 (-) False LOC110538769
XM_036939770.1 mRNA upstream 26953 54889605 ~ 54890333 (-) True LOC118938095
XM_036941554.1 mRNA upstream 32414 54895066 ~ 54907283 (-) False LOC110486831
XM_036941555.1 mRNA upstream 32414 54895066 ~ 54907473 (-) True LOC110486831
XM_036941559.1 mRNA upstream 70514 54933166 ~ 54938783 (-) False LOC110486844
XM_021558668.2 mRNA upstream 70514 54933166 ~ 54938835 (-) True LOC110486844
TU1355147 other downstream 1788 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 1788 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 84452 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 232661 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 362272 54465533 ~ 54470838 (-) True G1188127
TU1355395 other upstream 159996 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 160358 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 348847 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 572164 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 572489 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile