RNA id: XM_036941557.1


Basic Information

Item Value
RNA id XM_036941557.1
length 2924
RNA type mRNA
GC content 0.45
exon number 11
gene id narfl
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54925567 ~ 54933422 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACACAAACTGCTTTACAGCAGCACTAAACATGGTGTCCCAATTTAGCGGTGTTTTGCAATTGACAGATCTAGATGATTTTATCACTCCTTCCCAGGAATGTGTGAAACCAGTCAAGGTGGAGAAGAAGCAAGGCCGATCTGTGGCTAAAATTCAAATAGAAGATGATGGGAGCTATTTCCAGGTTAAACAGGATGGTGGAAAGCAGAAGCTGGAGAAAGCTAAGATCACTCTGAATGACTGCCTGGCCTGCAGTGGCTGCATCACCTCAGCTGAGAGTGTCCTTATCACACAGCAGAGTCATGAAGAGATTTACAGGGTGCTACGCAGCAACaagCAGGCAGGTGTAGCAGAGcagaaggtggtggtggtgtctgtgtCCCCACAGTCCAGAGCCTCCCTGGCAGCACGCTACGGCCTGAGCAGCAGTGATGCAGGCAGGAGGCTCACCGCCTTCTTCAAGGGTCTGGGAGTTCACCACGTGTTTGACACCAGCTTCAGCAGGACCTTCAGCCTGttggagagtcagagagagtttGTGGAGCGGTTCCATCGGAAGGAGCAAGACAAGCAGGCCCTGCCCATGCTGGCCTCTGCCTGCCCAGgttGGATCTGCTATGCAGAGAAAACCCATGGAGAGTTCATCCTGCCCTACATCAGCTCCACCCGCTCCCCACAGCAGATGATGGGCTCTCTGGTGAAGGGCTTCTTCGCTGGCCAGCAGggcCTGAACCCACAGCAGATCTACCATGTGACTGTGATGCCCTGCTATGATAAAAAACTGGAGGCCTCCAGGCCTGACTTCTACCTGGAGGAGGCTGACACCAGAGAGGTGGACTGTGTCATCACTTCAGGAGAGGTTCTGAAGATGCTAGAAGAAGAGAAAGTGTTGCTCAGTGATGTGGAGCCAGCCCCATTAGATACAATgttcagcagtgtgtgtggtgatgAGTTGCTGGGCCATGCAGGGAGCGGTTCAGGAGGATACCTCCATCACGTGTTCACACACGCTGCCAGACAGCTGTTtggagaggaggtgaaggagcTCACCTACAAGACACTCAAGAACAAGGACTTCCAGGAGGTGACCCTGGAAAGGGACGGTGTGGTCGTGCTGCGTTTCGCCACAACCTACGGTTTCCGCAACATCCAGAACCTGGTGCAGAAACTCAAGAGGGGAAAGTCACCCTACCACTTCGTAGAGGTCATGGCCTGTCCGTCAGgTTGTCTGAATGGGGGAGGCCAGGTGAAGCCCTTACCAGAGCAGAACAACAAGGAGTTGCTGCAGCAGGTGGAGGATCTGTACAAGGAGGAGCGCCCTCTAGTGCCAGAGGAGGACCAGCACGTGGCAGAGCTTTACCAGTCCTGGCTACAGagtgtaggagaggagagagccaggGAGCTGCTGCACACACAGTACCATGCAGTGGACAAGGCCACCAACGGACTCCTTGTCAAATGGTGAAGAAGAGGGTGAAAGGATGTTGAAGGGTTTCTGTaagtgaatggtctgtcctcaaGTGTCAGGGTGCATCTCAAGTGTCTAAAGTAGCCCTCTCTGTTTCATCTCCATTGAGTTTAACACAGGTTAGGTGGAAGCAACATGGCCGGTTCTTGTTGGGTATTTTCTGTCACCTGTCTTAGTTCTTTAATAtcagtagaaataaagaaaaaggcATGATGCACATACATTTTGTCTATTGAGATGCATCCCTATTCTAGGATTATTTGAACCATTTGAGTGAAATCACACAACTTGACCTTGGGTTAATGTTTATGCTCCATCTGTACTGGATGACTGAATTTAGCACTTTCCTTCAccgtctctttgtctctctcctctaccgtCTCTTTGTCTTTGCGGCTCtcttttcaagttttctactccgctagccagcacctagcCAGCACcttgcctaaataggtgtgcgttaaTTTTTCTTCTAGATCTGTCATTTATTTATACCAATATAAAGCCTGTATACATTCAGGCTATAGATTGTATACGCACAAGCTAATTCATACCAGACCACTGGTATGGTTGGGATAATTATTACTACATTTAAGTGTGCACTAATTATGAATACAGCAGCAAATTCTGTTATTTCTCTTGTATGCACTGAAAAGGATTTGGACTCTTGAAATGTTTTCTGATGGAATTCTAAAGAAATATTTTAGTTTAAATGAATATCATTTCTGCCTTATTTATAATAAATCTATGATACATATTTTGCATATTAAAATGTTAGTGTAACTTTCAAGTACGTTATTCACCATGCACCAGCAGTCATTGATATACATACTGACACGATACTGAGGAACCGTTTTAGCTGTAGAAATAAGCATACACTTTCAATATTTACATTCATGTTTTCAGTGTTTTCTTCCTTTGTATGGCATGGTGAGAACAAGAGGCACATACCTTCATACGGTATGCTGTCAGTTAAGCAGCTAGGTTCAACCATTTAATATGGACTAAGTAATATTAGCAATGTCAAAATATATTGCTTATATATTAAACTAAATGTTTAGCAGCTATTTTGTTATAGATATGTGGTGAAATGTTAATACAGAATGTCAAGCAAACATCACCGTTTTACCCTAAGAATTCTGCAAGCGGGTAATAGTCATTAGGGATATGAATCTCTCACAAATATGAAATTAATTGTTAGGTCAACAATAGAAACAATCTGCTTTATTGCTTTTTCTGTGAAGGAGACAATGGAGCTTTTAGTAAAACCTATGTATCACGAACTTCCCATTGGCACTCAAAGCctgatatgtgtgtatgtatatatatatatatatatatatatggagctTTTGATTAACAAAGAGCATAAGTTGTCTTATTTTCTATAGTATGAGAGATGTTTGGAAGCGCTTCAGTCTTGATTTTCTAAATGTCCAGCAATCACACTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1354483 lncRNA upstream 90184 54833998 ~ 54835383 (+) True G1187645
TU1354474 lncRNA upstream 98609 54826415 ~ 54826958 (+) True G1187638
TU1354433 lncRNA upstream 116074 54808538 ~ 54809493 (+) True LOC110485227
TU1354437 lncRNA upstream 117104 54804195 ~ 54808463 (+) False LOC110485227
TU1355278 lncRNA downstream 46197 54979619 ~ 54979889 (+) True G1188328
TU1355281 lncRNA downstream 48810 54982232 ~ 54982474 (+) True G1188331
TU1355284 lncRNA downstream 51044 54984466 ~ 54984780 (+) True G1188334
TU1355294 lncRNA downstream 67062 55000484 ~ 55002271 (+) True G1188343
TU1355307 lncRNA downstream 80446 55013868 ~ 55016506 (+) True G1188347
XM_036941556.1 mRNA upstream 126 54907568 ~ 54925441 (+) True LOC110486830
XM_036941546.1 mRNA upstream 115439 54755884 ~ 54810128 (+) False LOC110485227
XM_036941542.1 mRNA upstream 115439 54756241 ~ 54810128 (+) False LOC110485227
XM_036941544.1 mRNA upstream 117424 54755883 ~ 54808143 (+) False LOC110485227
XM_036941545.1 mRNA upstream 117468 54755883 ~ 54808099 (+) False LOC110485227
XM_021558671.2 mRNA downstream 5598 54939020 ~ 54940491 (+) True LOC110486846
XM_036941571.1 mRNA downstream 407280 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA downstream 407280 55340702 ~ 55394765 (+) False LOC110539040
XM_036941586.1 mRNA downstream 491443 55424865 ~ 55433209 (+) False LOC110538788
XR_005035606.1 mRNA downstream 491443 55424865 ~ 56123584 (+) False LOC110538788
TU1354165 other upstream 625254 54291585 ~ 54300313 (+) True axin2
TU1354170 other upstream 660539 54264066 ~ 54265028 (+) True G1187390
TU1354243 other upstream 727552 54188567 ~ 54198015 (+) False G1187452
TU1354245 other upstream 731429 54188567 ~ 54194138 (+) False G1187452
TU1353930 other upstream 1475851 53446423 ~ 53449716 (+) True LOC110538743
TU1355296 other downstream 60252 54993674 ~ 54997295 (+) False G1188344
TU1355297 other downstream 60252 54993674 ~ 54997295 (+) False G1188344
TU1355298 other downstream 60252 54993674 ~ 54997295 (+) True G1188344
TU1355362 other downstream 187839 55121261 ~ 55122619 (+) True G1188386
TU1355596 other downstream 407302 55340724 ~ 55366316 (+) True LOC110539040

Expression Profile