RNA id: XM_036941559.1


Basic Information

Item Value
RNA id XM_036941559.1
length 1869
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC110486844
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 54933166 ~ 54938835 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGATATTAGCAAACAGCTACAGTGTTGCTGGCTATGTTTTACAGGTCACTGGTAGCGAGTGCCTGCACTCTTGGCGTTCTTGGAGCCGCTGCAACGTATAAAATTGGGTTACAATAGCTAAACTTTACTTGGCTGTTCTCCAAGAACCACGTAGCCCTTGTGTACATTCCCCTGCGCACGTCCAAGCAGCCCTTCTACACAAGGAAGCTCCTGATATCCCGATAAGGAAGTCTTTACTGGTGGAGCAGAGCGACATGAAGGTAGAACTGCTGCCAGCCCTCACTGACAACTACATGTACCTTCTCATTGATGAGGAGTCAAAGGAAGCTGCCATCATAGACCCAGTTGAACCAGTGAAGGTTGTAGAAGCTATCAGAAAGCACGGTGTGAGACTTACAACAGTTCTGACTACCCATCACCATTGGGACCATGCGGGAGGCAATGAGAAGATGGTGAGGCTAGTGCCTGGTCTCACTGTGTACGGAGGAGATGACCGGGTGGATGCCCTCACTAAGAAAGTCAAACACTCCAACACGTTCAAAGTTGGTTCACTTACAGTCAAGTGTTTGTTTACGCCATGCCACACCACTGGCCACATTTGCTACCTTGTGACCAAAGACAACAGCACTGAGCCTCCAGCTGTCTTCACAGGGGACACACTGTTTGTTGCTGGCTGTGGGAAGTTTTTTGAGGGTACAGCTGAACAGATGTACAGGGCATTGATAGACGTGCTGGGACGTCTGCCCCCTGAAACACGTGTTTACTGTGGTCATGAGTACACCGTCAACAATCTGAAGTTCGCTCGACATGTGGAGCCCGACAACGAGGTCATCAAGAAAAAACTAGCATGGGCAAAGGAGAAAGTCAGTAATGGAGAACCAACCATCCCCTCCACTGTGGCTGAAGAATTCAAATTCAACCCCTTTATGAGAGTGAAAGAGAAGTCTGTGCAAGAGCATGCTGGGCAGAATGACCCTGTTGAAACCATGAGGAGTCTCCGTAAGGAGAAAGATGGCTTCCGGGTCCCCAAGGACTGACTGCAGAATGGAGTCTAGTGAAATCCGTTCCACTACATGCGTACCAGTGCACTGGACTTGTTACTAACAACTATGGCAAAATATTTCCTACCTGTTTCATTCACtacataaaatactgtatttacTACATTTCAACATTCTGTACATTAGCTTGTAGACCTAATGCAAGCATCAAGCAAAACATTGTAGTCTCGTCACGAGGAAGACTAGAGATGGGAGTATGAACTGGATTTACAGAATACAATTTGATATGTATTGCAGAAGATTGATTCAAGAATCTACTGAAATGTACAGTTTGATGTAGAGTGAATACAGTATTGATATTCTAATGTGAAAAATAATACTTTAATAAACCCCAACAATTCTCATCTGCAGAAGCAAAGCCAAACTATAAAGAGCAGGGTGAAGCTTGAATAAGTAGATTGTCTTAATGTGCAATGTTTGTAAATTAATTTAGACTTTTTGTCTCTGTATAAAGGTTTCTTATCAAGTGTTTTATTATTTTAATATGGTATATTCACTCAACAATATTTCCGAGGTTTGGGGTATAGTCCCTTTAGAGAAGCCAGGGCTACTTTAGTGTGATTGCTGGACATTTAGAAAATCAAGACTGAAGCGCTTCCAAACATCTCTCATACTATAGAAAATAAGACAACTTATGCTCTTTGTTAATCAAAagctccatatatatatatatatatatatatacatacacacatatcagGCTTTGAGTGCCAATGGGAAGTTCGTGATACATAGGTTTTACTAAAAGCTCCATTGTCTCCTTCACAGAAAAAGCAATAAAGCAGATTGTTTCTATTGTTGACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355225 lncRNA downstream 59168 54868567 ~ 54873998 (-) True G1188281
TU1355218 lncRNA downstream 78690 54854105 ~ 54854476 (-) True G1188275
TU1355213 lncRNA downstream 84860 54845460 ~ 54848306 (-) True G1188270
TU1355201 lncRNA downstream 115652 54816985 ~ 54817514 (-) True G1188259
TU1355198 lncRNA downstream 116700 54814810 ~ 54816466 (-) True G1188257
TU1355277 lncRNA upstream 37413 54976196 ~ 54976771 (-) True G1188327
TU1355293 lncRNA upstream 53743 54992526 ~ 54992792 (-) True G1188342
TU1355390 lncRNA upstream 60750 54999533 ~ 55002316 (-) True G1188399
TU1355393 lncRNA upstream 74163 55012946 ~ 55013237 (-) True G1188402
TU1355398 lncRNA upstream 80207 55018990 ~ 55019272 (-) True G1188404
XM_036941555.1 mRNA downstream 25693 54895066 ~ 54907473 (-) True LOC110486831
XM_036941554.1 mRNA downstream 25883 54895066 ~ 54907283 (-) False LOC110486831
XM_036939770.1 mRNA downstream 42833 54889605 ~ 54890333 (-) True LOC118938095
XM_036941549.1 mRNA downstream 43721 54833110 ~ 54889445 (-) False LOC110486827
XM_021556291.2 mRNA upstream 7578 54946361 ~ 54975807 (-) True LOC110485232
XM_036941560.1 mRNA upstream 65177 55003960 ~ 55011294 (-) False LOC118938330
XM_036941561.1 mRNA upstream 65248 55004031 ~ 55011294 (-) True LOC118938330
XM_021558657.2 mRNA upstream 75072 55013855 ~ 55016528 (-) True LOC110486834
XM_036941562.1 mRNA upstream 83836 55022619 ~ 55026465 (-) False LOC110486836
TU1355147 other downstream 101844 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 101844 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 184508 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 332717 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 462328 54465533 ~ 54470838 (-) True G1188127
TU1355395 other upstream 83865 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 84227 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 272716 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 496033 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 496358 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile