RNA id: XM_036941560.1


Basic Information

Item Value
RNA id XM_036941560.1
length 1358
RNA type mRNA
GC content 0.43
exon number 4
gene id LOC118938330
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55003960 ~ 55011294 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAACTCCGCCCATCCCACAAGCCGCATGACAAACCTGTGTGTCAAGATTATAACTTTTCAGAGTTAAGATCAGAGAGGACACATTTGCTGAGAACCAAGAGTTGGGCTACAAGACATTGCAGACTACCAGGAATGGGTCTTCCAGCCGGGCTGTTAGAGTTCTTGGGGCCAGTAGGGTGGGGGGCAGCAGTGCTGGTAGGGGTGGTTATATTCATTCAAGTGGTTAAAAAGAACAGGGAGGAGAAACGTTCTATTTCTCCAGGAACTCACAAGTGTTTTGGTGACGAGAGAACACGGTTGAAGGAGGAAAAGTCGAATGAAGCTTCTGGAAGAACTGGAAACTCTAGGAAGAAGAGAGTAGAACCGTGCCGTCATGACGAACATGAGGATGACGTAATAAAAGGTTACGGCCTTGGACATGTTCACAAATATAAAGATGACAAAAAATTTCGACCATCTTGGTGTGATAAGGAGAATGAAGGCATTACAGAGGCAGACCATATTCCACCTAAAGATTCTCTGAAGAAGGCCCTAAACAATGTACGACTGGATCGTCTCCTACAAGTGAATCCAAGGCTTCATGAGATGATCATGAGCCTTGTTAATGACCCAACTGGACAGAAACTGTTAACCATGAGGGTTCTTTACCAGGATCACAGAGATGCTCTGACCACTGGTAGCAgcaaagaatctaaaatatgcagGTGGATTTTGACACAAACAATGCTAAGCGGAAAAGATGATTGTGCAGTAAAAATGCTGGAGCAAGCTTTTATCATGGGTCATCCTATAGCTTCCCAGATGCTCAGACATGATGCTGGATTTGTTGACGCCGCACTACGTACCGAGGGTAAAGTTGACATGTCTGATGAAGGCACAAGGAGCTACTACAGATATGGCTACACTGACCTGGTCGATGAATATCTCTACAAGGGGATAATCAACGATGGTCAAGCAAAAGACCTCAAAATATGGGTGAAAAGAGAGATGCACCTTGACCGGGATACTGCAGAGTATAAGGAGATCCTTGAAGACATTAATGATTTCTATGACTGTTTTCATATGTTGTAGGCTTACTCTTACAGCAGTATCCAAGGGGAAAGAATCAAAAGTATACCTTCCATCACTTATCGATCATATTTTGGAGTAGCCTACAATTTCATGAATTTCACGTTGATAATCTCATTTTATAATTATAATGTTTTGCTTTACAACATTATTGGTTGATCCACAGAtgttgcaatctctattgcactccacactgccctttcccacctggacgaaaggaacatctatgtgagaatgctgttcattgactacagctcagcgttcaacaccatagtaccctcaaagctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355390 lncRNA downstream 1644 54999533 ~ 55002316 (-) True G1188399
TU1355293 lncRNA downstream 11168 54992526 ~ 54992792 (-) True G1188342
TU1355277 lncRNA downstream 27189 54976196 ~ 54976771 (-) True G1188327
TU1355260 lncRNA downstream 29509 54931724 ~ 54974451 (-) True G1188311
TU1355225 lncRNA downstream 129962 54868567 ~ 54873998 (-) True G1188281
TU1355393 lncRNA upstream 1652 55012946 ~ 55013237 (-) True G1188402
TU1355398 lncRNA upstream 7696 55018990 ~ 55019272 (-) True G1188404
TU1355402 lncRNA upstream 15826 55027120 ~ 55027376 (-) True G1188408
TU1355410 lncRNA upstream 26460 55037754 ~ 55038280 (-) True G1188412
TU1355476 lncRNA upstream 150810 55162104 ~ 55162455 (-) True G1188459
XM_021556291.2 mRNA downstream 28153 54946361 ~ 54975807 (-) True LOC110485232
XM_021558668.2 mRNA downstream 65125 54933166 ~ 54938835 (-) True LOC110486844
XM_036941559.1 mRNA downstream 65177 54933166 ~ 54938783 (-) False LOC110486844
XM_036941555.1 mRNA downstream 96487 54895066 ~ 54907473 (-) True LOC110486831
XM_036941554.1 mRNA downstream 96677 54895066 ~ 54907283 (-) False LOC110486831
XM_021558657.2 mRNA upstream 2561 55013855 ~ 55016528 (-) True LOC110486834
XM_036941562.1 mRNA upstream 11325 55022619 ~ 55026465 (-) False LOC110486836
XM_036941563.1 mRNA upstream 18243 55029537 ~ 55159189 (-) False LOC110514491
XM_036941564.1 mRNA upstream 18243 55029537 ~ 55159189 (-) True LOC110514491
XM_036941565.1 mRNA upstream 198320 55209614 ~ 55242150 (-) False LOC110516592
TU1355147 other downstream 172638 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 172638 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 255302 54744425 ~ 54748658 (-) True LOC110486825
TU1355100 other downstream 403511 54599401 ~ 54600449 (-) True G1188186
TU1355033 other downstream 533122 54465533 ~ 54470838 (-) True G1188127
TU1355395 other upstream 11354 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other upstream 11716 55023010 ~ 55026448 (-) True LOC110486836
TU1355681 other upstream 200205 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 423522 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 423847 55435141 ~ 55455234 (-) True LOC110485238

Expression Profile