RNA id: XM_036941563.1


Basic Information

Item Value
RNA id XM_036941563.1
length 2912
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110514491
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55029537 ~ 55159189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGAATGAATGGGCAGTTGTTTTCTGTTCATTGCGAAGTAAAGAGGGAGTGCTGAATGTTGCAATAGAGTATCGTCAGTTTACCGCCAGACAGCAGCATCACCTTGATGATGTAGCCGAACAACAACAGCAAACTCGCCAATTTTGATTTGGGACCAACGTGGCTCAATTCAGAGCTCACTGTGTGCTTGCTTTGTCCGGGACGTTAGCGCTGCCACACGACACTTCGGATGAGTCTTGGATAGTGCTCAGGGGAATTTAGCCTAGAGTTCATCACCGTTTTTGTAATGCTTTTCTTTTACAACTAATATTACCATCAGAAGCGTTGCTGATCTTTACCGTGCCAATTATTTAGCTAATGGGTCGTTTTAGTGGATGTTCCCTCATGATTTCAGTGAGAAGATGACTGCATTTACTTTGCTCTGCTCGGTCGTGTGATTGCAGTGGGATAGCGGACGCTCACATTCAACGCTGGACTGATATAGCATAGTTGTTCTAATCAAATATAaagattgttttgttttttatcagTCTCGTGCTTATCTTTGATGACAATTGCCTAGCGCTGGCATAAGTTTGAGTTGCCATAGACCGCCAAAAGACACAGAACCTAAACGTCGTTTCAACTTCTAGTCGTTTTTTTGACAACAGTCTTGACGGAGGAAGAATATGTTGATGAAGGAATATAGAATATGTATGCCGCTCACTGTGGAAGAGtACAGGATTGGCCAGCTGTATATGATCAGCAAGCACAGCCATGAGCAGAGTGAGCGTGGAGAAGGAGTGGAGGTGGTGCAGAACGAACCCTACGAGGACCCCACATATGGACAGGGACAGTTCACAGAAAAACGGGTCTACCTCAACAATAAGCTCCCTAGCTGGGCCAGGGCTGTGGTCCCTAAAATCTTCTATGTGACAGAGAAGGCCTGGAACTActacccctacaccatcacagAGTACACTtGTTCCTTTCTGCCAAAGTTCTCCATTCACATAGAGACCAAGTATGAGGACAACAAAGGCAGCAATGACAATATCTTTGACAGCGAGCCCaaaggggaggaggagatagaggtgtGCTTAGTGGATATCGCCTACGACGAGATCCCAGAGCGCTACTACAAGGAGTCTGAGGACTTGCGGTACTTTAAATCAGAGAAGACAGACCGGGGTGTTCTGCAGGAGGGCTGGATCGACAACCAGGAACCCATCATGTGCTCCTACAAATTGGTGACAGTCAAGTTCGAGGTGTGGGGTCTTCAGACACGGGTGGAGCAGTTTGTACACAAGgtTATCCGTGACGTCCTGCTCCTAGGACACAGACAAGCCTTTGCATGGGTGGATGAGTGGATTGAAATGACCATGGACGAGGTGAGAGAGTACGAGCGGGCCACCCAGGAGGCCACCAACCGTAAGATCGGCCCCTTCCCCCCATCCATCTCCATCACCGAGACCCCCTTGGCCTCAGTGGCCCGCAACGGGCCCTCCAGtgccccctccacccccctctccacgGAGCCTCCAGAGTACCTCTCCGTGCCCAAGGACCGACCCAGAAAGAAGTCAGCCCCAGAGACCTTGACCCTCCCCGACCCCAATCGCAGGGACTCAGGCTTCAGGCTGGCTAGCATCTTCTCCTGGGGCTCAACCCCTAACCCCCAGCCTGAATGAGAGGGGGACCCATAGGTGTGGTATACACCTATCTACATTCAGGGAGTGGCCATTTTGTCCCCTAGACAACTTATGTAAAAGGGAGTGTTGTTCACAGACCTCCTGTAACTTGGTGGTGTGGTAAACGCCTCTCCACAGACAGTTGCTGGTATCACCCTGAAGCCAGCTACTGTCACCAACTAACTGTGTCTTGGTCTGCTTTtgcagagagagagtcagtctgATCACCACGCAACACTTGGAGAGGAGTCTCAAGGCACACACCAAATACATGTacgcgcaaacacacactcactcacatacacacacacacacacacacacacacactgagtgtctTTTAAAAACCTCTTGAACCTCTCCATTGGTCCCATCAAAACACAGCAACCAGCACCATCTACCAGCCAGAAAGCTCATGTGGAGGTCAATTATAGTCTGATTTAATTTAGTTCACATTCCTCTGAATACTTTGCTTCTCTTCAGTGTCTCAGTCCTCTTTCATCTCAGTTGATACTGTATCTCAGGGTTTGTTACCTAGATACACAGAGATCTGATAAATAGACTCTTCAATCAGCACACTCAATCTTTCTTCATATGGATATAAATGTGTGGGATGATCAAactcatttcctcctctctccttgcaGTCAAGCCCTCTTATTGGTTGGAAATTGACACCATGTAATTTCAGATGTAATTGTGTGTTGGTTGTTATTCATGGTTTGTTGTAGGTCGCTGTGAACAGAGAAAAACGGTGGATTTCAGGAGAGTGttattttatcttgtgttttgttttgtaaATATGTATATTTAAGAATTATCTATTGTAAAATGCTGAATTCATTGATGTCTTTCAATGCTATGGAATTGCTGTAATCTCTgcattggagagagagaaagaggtctgTGTAGAGCTCTAAAGTGGAGGCGTTCTCTTTCTGAATCTGAGTTCTGTTGGTATGGTTTTGTTGGCCACGGTGCCCTTTTAAAGACATATAGAAAAATGCATGGTCTGAATATCCAGCCTCTGCTTTTCTTTTAAACTGGGGAGAAAATGTACCTTTTGAAATGTCTGTCTTCTATACGGTATGGGGCTTTTCCTTTGCTTGTTACAGACTACGACAAGGACAAAACATCTGATCAATGTTGTGATTTGGCTTTTAGGGATGATTTAAGTCATGAATTTGCaatcatgttgttgttgtgttttatatcaaATCAATAAATTAAATATTGCTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355402 lncRNA downstream 2161 55027120 ~ 55027376 (-) True G1188408
TU1355398 lncRNA downstream 10265 55018990 ~ 55019272 (-) True G1188404
TU1355393 lncRNA downstream 16300 55012946 ~ 55013237 (-) True G1188402
TU1355390 lncRNA downstream 27221 54999533 ~ 55002316 (-) True G1188399
TU1355293 lncRNA downstream 36745 54992526 ~ 54992792 (-) True G1188342
TU1355476 lncRNA upstream 2915 55162104 ~ 55162455 (-) True G1188459
TU1355478 lncRNA upstream 5557 55164746 ~ 55165054 (-) True G1188461
TU1355484 lncRNA upstream 9619 55168808 ~ 55169047 (-) True G1188467
TU1355486 lncRNA upstream 10925 55170114 ~ 55170416 (-) True G1188469
TU1355491 lncRNA upstream 16841 55176030 ~ 55176267 (-) True G1188474
XM_036941562.1 mRNA downstream 3072 55022619 ~ 55026465 (-) False LOC110486836
XM_021558657.2 mRNA downstream 13009 55013855 ~ 55016528 (-) True LOC110486834
XM_036941560.1 mRNA downstream 18243 55003960 ~ 55011294 (-) False LOC118938330
XM_036941561.1 mRNA downstream 18243 55004031 ~ 55011294 (-) True LOC118938330
XM_021556291.2 mRNA downstream 53730 54946361 ~ 54975807 (-) True LOC110485232
XM_036941565.1 mRNA upstream 50425 55209614 ~ 55242150 (-) False LOC110516592
XM_021558673.2 mRNA upstream 95508 55254697 ~ 55276671 (-) True LOC110486847
XM_036941567.1 mRNA upstream 129961 55289150 ~ 55293420 (-) False aimp2
XM_036941566.1 mRNA upstream 129961 55289150 ~ 55293431 (-) True aimp2
XM_021558675.2 mRNA upstream 153101 55312290 ~ 55316734 (-) True LOC110486849
TU1355395 other downstream 3089 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 3089 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 198215 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 198215 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 280879 54744425 ~ 54748658 (-) True LOC110486825
TU1355681 other upstream 52310 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 275627 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 275952 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 753035 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 753058 55912247 ~ 55915885 (-) False G1189279

Expression Profile