RNA id: TU1355680


Basic Information

Item Value
RNA id TU1355680
length 1562
lncRNA type sense_over
GC content 0.39
exon number 2
gene id LOC110516592
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55209614 ~ 55242150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGGCAACTTACTTCGAAATTCAGAACACTCTGGTTGGAgagtgccagagcgcagaatcaTTTATGAATTTACGAACTGCCTAAACTCAGTTGTTATGACAGATTTAAGTAAACATTGGCTAAAAAActgaattaaattgttgccagtaaCACAGTTACAGTCACTAACCCTCTTGATAACATGGAAACACTCTAGCACTAATAGCAGCTCTGCAAGGGTGAGTAACATGTTCAGAGTgaagtgttctctcatttgtgtctggaagtagctagcaagcaagctaAGCAAGTTTAGCCAGTTGGCTTGGGAGCTTGAAGGCCGATGTAAAGTCAGAatgctcagatcaaccctacacctcggccagagtgtcactcaaAGCACACTCCGAGTGCACTCTGACACTCTaaagtgaatttacgaacgcacctaTAATGTACAGTATTAAAATGTGGCTTTTGCTATAAAATGaccacagagacagaaagagctaAAGAACATGGCAACATAGTGAGCTGCTACTCTGTGTAATTTAATATAGTTTGAGCTGTCTTGTACACGTCTAATATACATTTCCGCTCTAGCGTTCTACATTTTTGTAATGAAATAAGTTAATGCTTTAATGAACGTTGCATTGTAAATGTTCACCCCTCCAGGCAGCTACAAACAATGTGTATTTATTTAACATGTATCAATGGATTAAACCATATTGAAGCTCCAGTGCAATGCCAGTACACAGATCTACTGTATTAGTTAGGGAGCTACACTGCTGCTTGTTGTTTACAGAGGAAACCTAgaatgtacagtgtgtatacagTACTTGTATGTTTTAAACATGGGCCTATGAAGATGATAGATATGTTGTTTTGTGTTCAATAGTAGCTTCATCAAACAATCCATTCCAATCTAGCTTGAACACAAAACATTCAAGCCCACCACAGTGATTATTGGACAGATACATTGTCTTCACTGAATGGCAATATCTCCCATTGTGTACCTCTCCTCAtattgtattctctctctctctctctccctctccctctctactgtctaattatctatctatcccccctctcttcccatcTGTTTCACTTAAAGTTCCAAAGCAAAAGATGAAGTGTGAGAATGTTTCAAGGGTGTTGTGATAAATTCCTTTCTTTCTATTGACACAGGACAGTTGTTGCATAATGAATTATCTTCAAAGTATTATAGCCAGCTGAACAAGTTAAATTGTAGTGATTTTCAGTCAACAAGCGACAGGCATGTTCTGTTTTTGGGGAACACTGTTGTATAGGTACTGATTTCAATAGCTACAAAGCAGTAATGTTCTGTGCTGACAGATTCAAGTACATCTAAACACAAACACCCCTTGTTCTCACCCATCTAAGCACCGAACCCATTGTTTTGTGCTAGGTTCTCtgacaggtacagtataatatatattttctacAAGGCCTAACCATTGCTGTTTTGCTGTGAGCACATAGTCATAGAGTTATTAAAGAGGCAATCTGgagttcaaacaacaacaaaggaacACCCTGCCACTGATTTGGTAAACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355678 lncRNA downstream 2494 55205846 ~ 55207198 (-) True G1188632
TU1355509 lncRNA downstream 9341 55199094 ~ 55200351 (-) True G1188490
TU1355491 lncRNA downstream 33425 55176030 ~ 55176267 (-) True G1188474
TU1355486 lncRNA downstream 39276 55170114 ~ 55170416 (-) True G1188469
TU1355484 lncRNA downstream 40645 55168808 ~ 55169047 (-) True G1188467
TU1355688 lncRNA upstream 32212 55243545 ~ 55254482 (-) True G1188638
TU1355724 lncRNA upstream 73113 55284446 ~ 55288214 (-) True G1188669
TU1355730 lncRNA upstream 93304 55304637 ~ 55304886 (-) True G1188675
TU1355759 lncRNA upstream 115740 55327073 ~ 55327354 (-) True G1188693
TU1355762 lncRNA upstream 128440 55339773 ~ 55340366 (-) True G1188696
XM_036941563.1 mRNA downstream 50503 55029537 ~ 55159189 (-) False LOC110514491
XM_036941564.1 mRNA downstream 50503 55029537 ~ 55159189 (-) True LOC110514491
XM_036941562.1 mRNA downstream 183227 55022619 ~ 55026465 (-) False LOC110486836
XM_021558657.2 mRNA downstream 193164 55013855 ~ 55016528 (-) True LOC110486834
XM_036941561.1 mRNA downstream 198398 55004031 ~ 55011294 (-) True LOC118938330
XM_021558673.2 mRNA upstream 43364 55254697 ~ 55276671 (-) True LOC110486847
XM_036941567.1 mRNA upstream 77817 55289150 ~ 55293420 (-) False aimp2
XM_036941566.1 mRNA upstream 77817 55289150 ~ 55293431 (-) True aimp2
XM_021558675.2 mRNA upstream 100957 55312290 ~ 55316734 (-) True LOC110486849
XM_021558678.2 mRNA upstream 110266 55321599 ~ 55324310 (-) False pvalb1
TU1355395 other downstream 183244 55022648 ~ 55026448 (-) False LOC110486836
TU1355394 other downstream 183244 55023010 ~ 55026448 (-) True LOC110486836
TU1355147 other downstream 378370 54823912 ~ 54831322 (-) False LOC110485228
TU1355148 other downstream 378370 54823912 ~ 54831322 (-) True LOC110485228
TU1355133 other downstream 461034 54744425 ~ 54748658 (-) True LOC110486825
TU1355681 other upstream 166 55211499 ~ 55212715 (-) True LOC110516592
TU1355745 other upstream 223483 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other upstream 223808 55435141 ~ 55455234 (-) True LOC110485238
TU1356467 other upstream 700891 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 700914 55912247 ~ 55915885 (-) False G1189279

Expression Profile