RNA id: TU1355859


Basic Information

Item Value
RNA id TU1355859
length 2853
lncRNA type read_through
GC content 0.44
exon number 2
gene id LOC110538789
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55533247 ~ 55574537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACCCTCCTTGCCCCTCTAACATGAATTACCCTCCTTGCCCCTCTAACATGAATTACCCTCCTTGCCCTATAAGTAttctacatttacatttgagtcacttagcagacactcttatccagagcggctTACAATTAAAAGTGAATCCCATCTAACACTGTACTGCCCATCTCACCCTTCTTACCCAGGTGGCCCAATTGCCCCTGTCGGTGAGCGATGGCCGCTGGCACCACATATGCATCACCTGGACGACGCGGGACGGCTTCTGGGAGGCGTACCAGGACGGGGAGAGGCTGGGCACCGGGGAGAACTTGGCCCCCTGGCATCCAATTAAACCTGGAGGGGTGATCATCCTGGGACAGGAACAGGACATGGTGGGGGGTCGTTTCGACGCCACCCAGGCCTTCGTTGGCGAGCTGAGCCAGTTCAACATGTGGGACCGGGTCCTCCGTCCTGTGGACATCATGGGAATGGCCAACTGCTCCTCCTACATGCCCGGGAACATTGTTCCCTGGATCGACACCAACGTCGAAGTCATGGGAGGAGCATCCAAGGCGGCGTTGGAGATCTGCGAGGACCGTATGTTCGAACCGTAAAGGAGTTGGATGTGTAACGTTGTTATGACACTGGGTTCCGAAGGTTCCGGAGGCTTGAGAGGTGGTTCTGGTTCCGCGCTCTCTGTGCTGCTTCAGAAACACCCCTCAAGGAGCAAAAAGGGCTCAACGGGTATTGCCTTTGTTTACAGACCTAGATCTAGTAAATGGGTCAACTTCTTGTTTTCCCAATGTGTTTTGCTGTGATTTTCCATGCTTTACTACATGGCTCACAAGTTCATGCCCATTCCAACGGGATTCTAACTAGAGGATTTTTACAGAGAACCCACTTGAGACTGAGGACTCTATACTCTGTATTCTGTCTTTTACTCCTTTAGCTAGAGATCCTTTTGACTGAGTCATGTTTGAACACAGCTCCTCTCTAAGGCATTTCAAACTGATAATCgagcactgtactgtactcagtgAATGTGAGCTAATATATAACCCATAGAAGCTTTTATTGTGTTGTGTGGACAGCTATTTCTGAGTTGCATGGCAAACTTCTCCGGTACGTTATGTGAGCTTGTGTTCCTTTGCAGTAAAAAGAAGCCCCATGTTCCAGGGAGGGATATTGATGAGTATTGATGAGTATAGAATATTAAGGCAACAGTGGAATAGACCATTGACTTCATGTGGAGTCATTTTAAACGTGTGCATGTGTTTTGACTTGTCACTGGGAGTATTGAGTGCCAAAGTTAATGCAtgcgtactgtatgtgtgtatatgtgtgtgcatatgtacatGCACAGGTGGGTGTGTTTACTGTAAtagcagtttgtgtgtgtgtgggtgtgtgcacgcTCTCGTTGTGTAAAAGGCCCTAGAGATTAGTGACGAGGACATTCACATTCTTGTAAATCTATTCTAATACCTCTCCTCCCCTTGAGCAGCTGCCATCCCAAGCAGCTTTGTGCAGCGGCCGGCCCAGGCAGGTTAAAAGCAAAGTCGGAAAGCTGCCGAGGACTGGCGGGAAGCCGGGAATTCAGCGCTCTGTGTGCCACACTGGGGGAGCGTGGGTTGGAATGGGAAGCCAGGGACTGGATGACCTTCAAGGAAGGATTTTATCCATAATCTGTGATAGTAAATATCATGTTTGTCAAATTAATGAGAAGATGAATGTGAGCTATTTTACTATCCCGTTGCATTGTATAATATAGAAAAATGCCTATATAAGCCAGAGAGACGCTATGAAAATGAAGACTGTGAAACTAAAGATGAGGAGAGATCTGAATGTTTCTGGTTGGAACAAGACAAAAAGCACTGGAACACTTTGCTATGTTTCCGTTTGTAGAAAATGTCTTTAATTTCCTTAGAGATAAGGAAAAAGAACCACGTTCTGAATGAATGTTGTGCTTCATTCCAGTCCATTTAAAGGACAGTGATTTGAAATATGGTGCAGTAGATACATGTGTGTCCAGTTTGCTTCTTCAACACTGTTCACACTTGTTTTGCTGCAACACAAAACCACAATGCCTGTCAATTCAACCCTTATCTGGTTATGGAGAATGCAGAGGACTAACCTGATGTTAGGAAACAAATGGACGTTGGTCTCTTCCTTTGGGACATCTTGGAAAGATATATGTTCGTAAAAACAGAACAGTGGGATTCAGAACATTTCTGATGGCCTTTGAGAATGATATAATGCAGTAATGTTTTAAAGGGGTACACACCTATCATTTTAGAACATTTAAAAGTTACTCTACATATGAATGTCCTTTTATGTGTTATATAAATGTCGGTTTTTATTTCTGTAGAGAAGATTTAATTTCTTGTATTTTATTATCATTTCTGCTCATGAGTTAATGCGGTTCCCTGCACTGAGTCACTATTTCATTCAGAGTGTTAGTGGAAGAAGGACACCTTCTTTTAAAATGTTCAATGGCCTTTTCTTCAGCAGTGAATGTGCTTTTTGTTTGCGGATGATTCAAACCATGAAGCTGTAATCCTTTATGGGGAAACAGCCACGTCCGTTTGGGATGTTACAACCACAGAGAAGTTACTGAAAACAACACTGTTTTTCACCTCGGACATCATTGcactaactttttttttttttacaacgtcTATCTTTCAGTTCAGCAAatatcatttgtatttttttcctaCAGTGCAACCTTGGAATTGTGAAAAGAGAAATGAGAAACAGAAAGGATTCAACTGTTGTTTTAACCTCATCTTCATCTATCCTTTATGTTCTGTGTCTCCATGCAGTGTGGTTGGATGTCCTCTTGCACCTAATAAAATATTCAAAATCCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1355822 lncRNA downstream 9978 55522939 ~ 55523269 (-) True G1188752
TU1355814 lncRNA downstream 15789 55517190 ~ 55517458 (-) True G1188744
TU1355739 lncRNA downstream 101069 55429734 ~ 55432178 (-) False G1188682
TU1355915 lncRNA upstream 82913 55619657 ~ 55620056 (-) True G1188831
TU1355918 lncRNA upstream 88115 55624859 ~ 55625061 (-) True G1188834
TU1355924 lncRNA upstream 97562 55634306 ~ 55634596 (-) True G1188840
TU1356378 lncRNA upstream 221425 55758169 ~ 55759029 (-) True G1189200
TU1356422 lncRNA upstream 289638 55826382 ~ 55827154 (-) True G1189238
XM_036941579.1 mRNA downstream 23329 55435136 ~ 55509918 (-) False LOC110485238
XM_036941580.1 mRNA downstream 23329 55435136 ~ 55509918 (-) False LOC110485238
XM_036941575.1 mRNA downstream 114186 55394864 ~ 55419061 (-) False LOC110519575
XR_005035605.1 mRNA downstream 114186 55395866 ~ 55419061 (-) True LOC110519575
XM_036941577.1 mRNA downstream 114187 55394864 ~ 55419060 (-) False LOC110519575
XM_036941583.1 mRNA upstream 492677 56029421 ~ 56036818 (-) False LOC110486851
XM_036941584.1 mRNA upstream 492677 56029421 ~ 56036822 (-) False LOC110486851
XM_036941574.1 mRNA upstream 551548 56088292 ~ 56110969 (-) False LOC110485237
XM_036941573.1 mRNA upstream 551548 56088292 ~ 56110971 (-) False LOC110485237
XR_005035604.1 mRNA upstream 552638 56089382 ~ 56110971 (-) False LOC110485237
TU1355745 other downstream 78013 55434816 ~ 55455234 (-) False LOC110485238
TU1355744 other downstream 78013 55435141 ~ 55455234 (-) True LOC110485238
TU1355681 other downstream 320532 55211499 ~ 55212715 (-) True LOC110516592
TU1355395 other downstream 506799 55022648 ~ 55026448 (-) False LOC110486836
TU1356467 other upstream 375480 55912224 ~ 55915885 (-) False G1189279
TU1356465 other upstream 375503 55912247 ~ 55915885 (-) False G1189279
TU1356466 other upstream 375503 55912247 ~ 55915885 (-) False G1189279
TU1356468 other upstream 375503 55912247 ~ 55915885 (-) False G1189279
TU1356469 other upstream 375503 55912247 ~ 55915885 (-) True G1189279

Expression Profile