RNA id: XM_036941578.1


Basic Information

Item Value
RNA id XM_036941578.1
length 6084
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110538766
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 55834111 ~ 55915904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCTTTCTgaagctctctctctttttatgtCACTATCGCTGTTTGCATGTAGACGCAGCCAATCTCTTCCCTATGACGCCGGCGAGGCTGGGCTCAGACGGGTTTGATCATAATATTTAACACACCCACCCAGTAAGAGCACGATACTAGTTCGAATGAGAAGTATAACAGCCACGGGACAAGTGGAAGCGAAAATCTCTGCACCTGCCAAGCGGTGTAGCCTACTGGCTCTGCTGTTCCTTGAACGGAAAGACGGAGACGGGagatttatatttttgacaggaTCTGGCCTAGGCTTGCATCCAGGTATCTTCAGCTGACAAAGCatcacatgtttttttttaaatctcgtCGATTTTTTTGCGTTGCTTTTCTTTAACGCATTTTTTTGTGCCTGTTGCTATTTCCTACAAGGACGGTGGCTACATTTTTTAATCTGAAATTGAATAAAGACTGTCCCTCGGACTTTTAACAAAAATGACGATTGGACAGCATTGACACGTTTTTATGCTCAGCATTGCATGTTCTGAGGATGGAACAGTGCTTTCGCAACGCAATTGTGCTAAAACACGTTTAAAATTCCCTAAACTGTTCACTGCTATTACGATTAGATATTGTTTTGTGCCGTATTCAGAATAGCCACAGACCTATTTGCTTTAAGGTGCCTGCTCTCCGCAATGAGTCGGCATGTCCATCTGGTTGAATATGAATAATTCAGTCTTTTCTAAAAGACCAGCGCTCTGTGCGTAAACATGGAGTTTCTGATATAACACGGATTATGTTTGGAATGACCAGAAAAAATATCTAAATTATCTACATTGGGTTTTTGCTCCATATTTCACATGTACtatacttttttatatatatcgGTGTTGTGCGCTGCTTTTATGGTTTAGTGATATAACAACAACTACTTAGAAGTGAATCCTGTACAAAATGATCAAGATGATACTGTTTCGTAAATTTCGAGTTTTGATACTCATGGTGTTTTTGGTGGCGTGCACCATGCACATTATGATAGACTTGCTCCCAAAACTAGAGAAGCGAGCGGCGGGACCGGAAACCGGCAACGGTGGCTGCCAGTGCACTCACAACCCGAGCGAGGAGGCCGGGAGCTGGGGGAAGCAACGCGCTAGGTCGGTGGCGGAACCGGGCTGGCCTAACAAACACACGCTGAGAATCCTGCAAGATTTTAGCAACGAGCCGAGCTCAAACCTCACGTCCCATTCCCTGGAAAAAATCCCTGCCGCTGGGGAGAGAGCGGAGTCTTTCAAACGAATGAAACAGTACGACGGGGCAGCGGATAACCAGAAGCCGCTCATCAGAGACGCCAGCCGGGGTAAGAACGTTGCTGCGCCCGGTATCTTCCGGCTGCCGTCTCTGTTCGAGCATCCTTTATACAAGACGGACCTGCCGACCCTCACAGACGACGACACCTTGTTCAACGTCAATACTGACATCAGGTTATATCCGAAAGCAGCGGGGAATCAAGAATGGCACAATGAAGCTAACGTGGAAGAGGAGGAGTACCCCCCTACAGGGGAGGTGACAGCCGAGTCCTACCCCAACTGGCTTCGCTTCCACATCGGTATCAACCGCTACGAACTCTACTCCAGACACAACCCTGTCCTGGACTCCCTGCTCAAGGATCTGGTCACCCAGAGGATCACCAGTGTGGTCATGAAGTCAGGAGGAACTCAACTGAAGCTCATCATGACCTTCCATAACTACGGACAGGCGCTGTTCAAGCCCATGAAGCAGACCAGGGAACAGGAGACACCCCCAGACTTCTTCTACTTCTCTGATCTGGAGAGACACAACGCTGAGATCGCTGCCTTTCAtctggacagGATCCTAGACTTCCGGAGAGTGCCCCCGGTGGCGGGAAGACTGGTCAACATGACCAGGGAGATACGGGATGTGACCAGGGACAAAAAGCTCTGGAGGACTTTCTTCATCTCCCCAGccaaTAACATTTGTTTCTACGGCGAGTGCTcctactactgctctactgagCATGCTCTGTGTGGGAAGCCAGACCAGATCGAGGGTTCTCTGGCTGCCTTCCTGCCAGACCTGGCCCTGGCCAAACGCAAGACCTGGAGGAACCCTTGGAGACGATCCTACCACAAACGCAAGAAAGCAGAgtggGAGGTGGACCCAGACTACTGTGACGAGGTGAAGCAGACTCCTCCCTATGACCGTGGTTCTCGTCTGCTGGACATCATGGACATGACCATCTTTGACTTCCTCATGGGTAACATGGACCGGCACCATTACGAGACTTTTGACAAGTTTGGAAACGAGACCTTCATCATCCATCTGGACAAtggaagaggGTTTGGGAAACACTCCCATGACGAGCTCTCCATCCTGGTGCCTCTGAGCCAATGCTGCAGAGTGAGGAAGTCGACCCACTTGCGTCTGCAGCTGCTCGCCAAGGAGGAGTACCAGCTGAGCCGTCTGATGGAGGAGTCCCTGCTGCGTGACCGCCTCCACCCCGTCCTCATCCAGCCCCACCTGGAGGCCATGGACCGGAGGCTGCGCCTGGTGCTCCAGGTCCTGGCTGTCTGCGTGGAGAAGGAGGGCTACAGTAACGTGGTGGAGGTGGACGACCACCACTGGGCCAGAGAAGCCAGAGGGGGCAGGGACACAGCCACCCACAGGAACCCAGGGCACAGGTAGTGAGGCCTGgctaggaagagagggagatggggggtggaggggtggtaCCCCTGGTTCTCCCGCTTCTCCCCATCCTGGACCTCCAAAGAGACTACCGTTGATGGTGAACCAACCATGGGTGTCTGGTCTCACGGAGAGACTGACTGGATCCTGTGACTGTGCGGGAGCCGCCATTTTGAATTCAGTGAATTCCGAGACTTGCCGTCAATGCCTCTATGGAACCTCCCATGTACGTGTGTTTATATATAGGTACTGTTGGTCCACAGATATAGCAGTGagctgaggagagaagaggcctgGTCTTTGCTAAGTACCAATGTTTTATTACTTCTCCTGGACATGATAAATAGGGACCATTTTGATTTTACTTTGTTGGTTTTCTTATTTTACTTTTGGGGGGTTGTTTGAATGCGAAGGCTATCATTGTTTGCTCGGGTTAGCGCtaagctagctacagtatatttACACAACCAAATGAGATTTTACTTTAACAAGTTAAAATGTGGTTTGAGATTAATTTATGCACAGTAACTGGAGGAACGGAATAGAAGGTTTGTAAAGCTTTCATTTTAAAGGGAGAGTATGAAAAGAATATAGTATATTATTTATGATGAATGTCAGTGTGACCGTTATTTCAGTTGCCTCCATTTTCAACCCATCACTATCTATGACTTTGCCTATAGGCCTCCATTACTATGAGACATTATACAAGAGGCTGTTTACAGTACAGAAAGTACCTGGTATTTACTAAGAAATTACATGGTAAAATGGTAATTGTACAGTAATACCCCATTAATTACTACATAAAGTACTCATTTGGTACTTTGGGATTCAAACAAGCATTTAAATATACACCATTTTGATCCAGGTAGTTCCCAATTGTGGTGAATTTTAAGCATAAAGTATAGTGAAAGCCCCAGCTAGAACTCAGTGATGCCACATCGTTTCCTAATAAGTACCACCTAAATACCCGTCGAAGCAGTACACCATTAAAGAAAGTGCTACCGGTTTCCTTTTCAATAAAGCTTTCAGTTCAACTTAAATTCAGTGTTCAAAGCCTGGATGGAAGCAGCTCTCTTAAACAAGGGCTCTTATTGAAGCACCTCTCAGCAGCCCAGAAGTTGACTAGTGTTGAGTGCCCTTGCCCTCGTCCATTAATATTAGATATCATTCAATCTTTCCATTTCTTTTCATCAAAGCCTTCCATCAAAATGTGTCACTCGTTCATGGTTGGCACTTAAGATAATTGCTGCCCCATTTATTCAGAAATTCTGCATTTTTGACTGAGGAACTTCTAAATCAATGCTTTGCTGGAATGGCTGGAATGAAAACATGCTGCGTGGTTTACTAGGACATGTTTTTCAAGGACATGAGAATAGCCTTTACAGGAAGTTGTGATAGATGATGACAGTGTGACCGACATGGCTGAAACGTTTGTTTTTGCTTAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGCTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGCTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCATGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTACCTGTTCTGGTCTCAGAGATCTCACGTTAGCTGAGCCTATCTGTTCTGGTCTCAGCTGGCATGGCAGTCCTGGCTTACAGGATGTGGATACAAAGGGTACctcccaaatgacatcctaactccatagggctctggtcaaaagtagtgcactatatatggaatagggtgcgatttgggattcatacatataataataatacaggaCTATGTAAATACTGCCATGAGAGAATATCAATCTGACACTATTCATTTAATAGGCCTTCGAGGTCTTGGTAAAAATCCCCATGTATCTGCATATCAACAAATGAGAGATTTTTGCTGTTTTTCCCCCAAAATACATGATCTCTTTGCTTTATCCCCACGTGAGATGATTTTATTACCAACAATATCTCACCAGTTTTGTTCACACTTCACGCAGCCTCAAGTTGACGTCAGTATCAGCGAAATGATTATTTGGGAGAAATAGTCTAGTCTCTATCCATGTGGATGTAAAGATAGGTTGGAACTGTGACTACAGTGTATACCAGTATACAAGTCAGATGCACTACCccgttgtcatgccattcatctttTATACCAACTAAAGTTACCATTACAACACCAAACAAATGTCAAATGCAGTTTTCTGTTACAATCCAGGCTACACAGTCACGCACAATGTTCCTGTTGTATTGTTCAACGCTTTTCCAAATGAAAAGGATTTATTGACGTGTCATGACATTTAAACATGGATGTGGAAATAAGGTTTTTCTCTTTTTGAAACATTTCTCTTTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATGTTTTGGTACTAATTATATTTTGGTACTATTTACTGTTATGTCCATTTTATGATCTGAAAAAGCTGTCTTTGATTGCTGGAAGCGTTGAGCTCTATACAGGCGTTCTATATTCCACCAATAGCCCCTAGAATCTGGCTACGTATGGCTAACCTGGTGCCTGTGGAATGTTGGGTATACTGAATGTTTCAGGTGGCCATACGAACAGGACTACAACTACATAGAGGTCACACTACAGCCTGTGTGACCTGGATCCTCAGACTAAGTTGAAAGAGTTAACATTATACATTTacgtttgagtcatttagcagacgctcttatccagagtgacttacagtagtgagtgcatacatttttgtactggtcctccgtgggaatcgaacccacaaccctggagtTGCTCTACCAACTCAGCCTTCTCCTCCCTTCATACAGCAGCAGTTAAAGGGTTAACTCAGCCCTGGGCGTTGTACTTGCAATTTTCATATTGTCAGTGTAAATATCTATAAATATATTGGAAGACCTAAGAGGCTGCAGTGCCGCAGCGATACGCTTCTGTTCTGTTTTCTCCTATTGCATTGTTGCTGTGAACATCTGTTAGCTAAATGATAAAGGTGTGCAATAAAAAAATTACaacaaaga

Function

GO: NA

KEGG:

id description
K21958 FAM20C; extracellular serine/threonine protein kinase FAM20C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1356055 lncRNA upstream 80535 55753287 ~ 55753576 (+) True G1188946
TU1355914 lncRNA upstream 214549 55619351 ~ 55619562 (+) True G1188830
TU1355896 lncRNA upstream 226558 55607303 ~ 55607553 (+) True G1188817
TU1355880 lncRNA upstream 251386 55582036 ~ 55582725 (+) True G1188801
TU1355826 lncRNA upstream 308131 55525658 ~ 55525980 (+) True G1188756
TU1356158 lncRNA downstream 31794 55947698 ~ 55952898 (+) False G1189042
TU1356159 lncRNA downstream 31794 55947698 ~ 55958296 (+) True G1189042
TU1356163 lncRNA downstream 39281 55955185 ~ 56024767 (+) False G1189044
TU1356180 lncRNA downstream 69725 55985629 ~ 56026601 (+) True G1189054
TU1356184 lncRNA downstream 83532 55999436 ~ 56000215 (+) False G1189057
XM_036941586.1 mRNA upstream 400902 55424865 ~ 55433209 (+) False LOC110538788
XM_036941571.1 mRNA upstream 439346 55340702 ~ 55394765 (+) False LOC110539040
XM_036941572.1 mRNA upstream 439346 55340702 ~ 55394765 (+) False LOC110539040
XM_021558671.2 mRNA upstream 893620 54939020 ~ 54940491 (+) True LOC110486846
XM_036941557.1 mRNA upstream 900689 54925567 ~ 54933422 (+) False narfl
XM_036941568.1 mRNA downstream 119736 56035640 ~ 56088193 (+) False LOC110485236
XM_036941569.1 mRNA downstream 119736 56035640 ~ 56088193 (+) False LOC110485236
XM_036941585.1 mRNA downstream 198259 56114163 ~ 56119485 (+) False LOC110486855
XM_021558682.2 mRNA downstream 198263 56114167 ~ 56121445 (+) True LOC110486855
XM_036941590.1 mRNA downstream 680717 56596621 ~ 56674315 (+) True LOC110538765
TU1355596 other upstream 467795 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 711492 55121261 ~ 55122619 (+) True G1188386
TU1355296 other upstream 836816 54993674 ~ 54997295 (+) False G1188344
TU1356156 other downstream 22568 55938472 ~ 55939357 (+) True G1189040
TU1356992 other downstream 920512 56836416 ~ 56836996 (+) True G1189738
TU1356914 other downstream 962024 56877928 ~ 56925607 (+) True G1189675
TU1357093 other downstream 1138549 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1138563 57054467 ~ 57055403 (+) False G1189819

Expression Profile