RNA id: TU1356912


Basic Information

Item Value
RNA id TU1356912
length 2164
lncRNA type read_through
GC content 0.43
exon number 2
gene id LOC118938331
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 56688583 ~ 56926185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCGATTGGCCAGAATAGGCCCCCTCCGGCTCTGCTGTCCGAGTTCCAGGTcgcggtgtgtgtgtgacatcaactgtgtgtgtgtgacatggactgtgtgtgtgtgtgcttgtacaaGGAAGGGAACGAGCGTGTTCCAATTCAAGATGTCATGCGTCAAAAGAAGCCGCCCCTCCCCTGGATGTATCTCAATGTGCGCTTAAGTGTTATAAAAATGTACATTGCGTGTTTTAACAGATTCTAAATATGATTCTGATATCGACAGAAAGAAAAAATGACTGAATATAACGCTCTTCTTCCGGTATGTATTTTGATGTGCATATTACGGCTATACGACACCACTGAGTCAGCGTTGGTATCTGTCCCGCTTTGTGTTCAATTAaacatttttataaaaataaagGTTTCAATATTCACACTAGCGTACTACTTTAGAATGCATGCCTTATACATTGCTTCATTCTAAGTGGGTAGTGTGCTAATTTGGATATTGGGGGGTGGTCAAAACTCTGGAGGTCACCGAGTCGAAGTTCAGACGTGTGCTCATACAACATGATGTACAGTAGACGCCACATCATCACCATAAAGGTTAAAGGTCAGGGCATAGGGCCCGGCCGGCATCATCTCACACGTCGTCATCTCATCTCACCACAGTTCTTCATCAATATCTCTGTCCATCATCTCCATCACCAAAGGCTGCTGTCTCCATAAAAATGAACAAGTATTCGACTCCAATAGATTCTTAGTCCTACACGACTTGAgttctcagcaccatagagctgAATCAACCGTACAGAGACTCAAATATGTcataatatggacaccgtacagTAACACAGTCCTCCCCATTAAATGGGGAACCGTGACTGTTGTACAGTGTCCGTATTCGGACTGTTTCAGTTTTCTGACTCCACATCAAGTGTCTCTCTCATTCCTTTCTCTGTATGTGGCACTCACAGTAGCGTAGCCTGTTCCCCTTACTGcagcattctcacacacacagacagcctcTTTAGGGTGTAGTGTACAGTACTTCAGTACTGCTTTAGGATGTAGTGTACAGTACTTCAGTACTACTTTAGGGTGTAGTGTACAGTACTTTAGTACTTCATATCAGTGGACACATACAGTATTAGGGCGTACAGTACAGACAAGAGCAAAGCATCACACCACAAACCTCTTCTTCTTCTGATTCTTGATTATGATGCTCTCATTATTTAATGGTGTATATAAGTATTTGACGCTGTTTAACTGTAAGATGTGATGTACTAATATAATTGTGTATAGTATTTCCTAGAGATGTTTATTTTCTATAAAATGAATATGTTATTGCTTATAAAAATGTTATTAAAAGAATCCATTCAGAAAAGAGACTTTTGGGAATGTCACTCGTTCTAAGTTGAGCATGCAGTGTTTTTTATTGTTCATGTTTTCATTGTTTGAATCGATGACACTACAGCATCAATTTGTGTGAAATGTTTTTGTAACGCCAATGTCAAATATACCAGCACCTTTCAACGCTGCCCAGACCAAGGACTGTTCTTTTTTTCTCATCTTCTTCCaaatctacactgacacacagacacacatttgtGATCATTAATGACAGACTGTGAGGACAGAAATACAGATGTAAGAATAGGACATGTCATGACACAcaaaggtgcacacacacacacacacacacacacacacacacacacaggtgagttgtggggatacagagagggatactacacacacaggtgagttgtggggatacagagagggatactacacacacaggtgagttgtggggatacagagagggatactacacacacaggtgagttgtggggatacagagagggatactacacacacaggtgagttgtggggatacagagagggatactaCACAGGTAACACTCATATCGCGCCGTGTCCCTTTCGACCTCATTATGAAAGGCTTAAAAAGGCACACAAAACCCACAGAACTTCCAACCTTTCTCACACACGCAAACTACAAAAAACCCTCTCTGCAGTTACCCGTCTTGGCTCCGGGGGTGGCTCTGCGTCTGAGCGAGCGGTCCAGGAGCTGATGTGTTCGTGTGGGACTGGCCCCAGCCATCAGCCTGGCGGTTGCCTCATGAAGAAAcaactgagagggagagagaacagtgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357018 lncRNA upstream 1226 56912512 ~ 56916299 (+) True G1189760
TU1357001 lncRNA upstream 1393 56867416 ~ 56916132 (+) True G1189745
TU1357000 lncRNA upstream 50711 56866472 ~ 56866814 (+) True G1189744
TU1356978 lncRNA upstream 94594 56822727 ~ 56822931 (+) True G1189727
TU1356974 lncRNA upstream 98478 56817860 ~ 56819047 (+) False G1189725
TU1357034 lncRNA downstream 18694 56944879 ~ 56945436 (+) True G1189774
TU1357059 lncRNA downstream 58676 56984861 ~ 56985087 (+) True G1189790
TU1357060 lncRNA downstream 59114 56985299 ~ 56985582 (+) True G1189791
TU1357061 lncRNA downstream 60853 56987038 ~ 56987272 (+) True G1189792
TU1357064 lncRNA downstream 63845 56990030 ~ 56990342 (+) True G1189795
XM_036939771.1 mRNA upstream 237661 56678602 ~ 56679864 (+) True LOC118938096
XM_036941590.1 mRNA upstream 243210 56596621 ~ 56674315 (+) True LOC110538765
XM_021558682.2 mRNA upstream 796080 56114167 ~ 56121445 (+) True LOC110486855
XM_036941585.1 mRNA upstream 798040 56114163 ~ 56119485 (+) False LOC110486855
XM_036941569.1 mRNA upstream 829332 56035640 ~ 56088193 (+) False LOC110485236
XR_005035611.1 mRNA downstream 34413 56960598 ~ 56963017 (+) True LOC110486865
XM_036941601.1 mRNA downstream 81815 57008000 ~ 57019247 (+) True LOC110517037
XM_036941602.1 mRNA downstream 93517 57019702 ~ 57027740 (+) False LOC110516169
XM_021558689.2 mRNA downstream 122747 57048932 ~ 57053449 (+) False LOC110486862
XM_036941603.1 mRNA downstream 122747 57048932 ~ 57053449 (+) True LOC110486862
TU1356992 other upstream 80529 56836416 ~ 56836996 (+) True G1189738
TU1356156 other upstream 978168 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1551209 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1794906 55121261 ~ 55122619 (+) True G1188386
TU1355298 other upstream 1920230 54993674 ~ 54997295 (+) True G1188344
TU1357093 other downstream 128268 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 128282 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 128282 57054467 ~ 57055617 (+) False G1189819
TU1357092 other downstream 128282 57054467 ~ 57055617 (+) False G1189819
TU1357094 other downstream 128282 57054467 ~ 57055403 (+) True G1189819

Expression Profile