RNA id: XM_036941602.1


Basic Information

Item Value
RNA id XM_036941602.1
length 4086
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC110516169
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57019702 ~ 57027741 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAAAGAAACGTTGACGTTCTCTTAAAGCCAGTACACGTCCAGAGTGAGCTATCCTAGGGCCGGGGAGGAGTATAGTAAAGTGGCAGGCTTCTAGATACTGCTGGTCAGTAGCCCCTCTCCATATTAAGAGCTTCCTCAGTCTGTGGTTCATGACTGTTGCAGTCGGGGATACGCACGCATTAGCGCTCATCATGCCTGTTCGAGCTGAGTGCTGCAGCAGTGCGGCCCGTACATCCTCGGCCTCTCTTATCCCTCCTCCGCCGATCAACACGCACCAGCCCGGGGTAGCTACTTCGCTGCTGTACAGCGGTTCACAGTTTCGAGGACATCAGAAGAGCAAAGGAAACTCGTATGATGTTGAGGTCGTTTTGCAGCATGTGACCATGGAGGACTCTTATCTGTGTGGTTACCTGAAGATCAAAGGCCTAACCGAGGAGTATCCCACTCTTACAACGTTCTTCGCAGGAGAGATCATCAGTAGAAAGAGGCCCTTtttaaccaggaagtgggacgcCGACGAAGATGTGGACCGCAAGCACTGGGGTAAGTTTCAGGCTTTTTATCAGTATGCAAAGAGCTTCAACTTGGACGACTTTGATTACGAAGAGCTGAAGAACAGTGACTTTGTCTTTATGAGGTGGAAGGAGCAGTTCCTGGTCCCGGACCACACCATTAAAGACATCAGTGGGGCGTCCTTCGCTGGTTTCTACTATATCTGCTTCCAGAAGTCCACAGCCACCATTGAAGGCTACTACTACCACAGAAGCTCTGAATGGTACCAGTCGTTAAACCTCACCCATGTCCAGGAACACAGTATGCCCATCTACGAGTTCCGGTGATACCCGCCCGCTGGCAGAGGGGACTTTGATTGGCACTGCCCTAGAGACTTGCTTATGTAGGGGAGATGAACTGACCAATCATGCCAAGGATGTACCTATCAGTATTCCCTGGCGAAAGGGAGAGAACAAtgtaaggagggagggatagacaaAGAACAAGGCCACCGACCGACAGTTTTTCCCAGCCTGCCTTTCTCGACTTTGCATCAGCTGGGATCAACAGCACTTTTTCTTTGGTTGTTTTCTCTTCCCCACTCTTTCTCCATTCAGCTTCCTGTTTTTGAAGCTACTTTTCCTCTTTCCACCATGTTGAAAACGCTTTCCACTTTTCAGTtgggaatccccccccccccccctctgaaaATGGGTGGGGGGTGCAGCAGTCTAAAATTTAAGTACAAAGTTTGATATTGCATTTTAATTTGTCTCAATGAATTGATGCCTGATTGAGATTGACCAAGCTACAGAGTGGGCAAGCAATCCTGAAAAGATGGATCTCCATAAGGTCTTGAGGTGTGACATCATCAAGGGTGTGCTCAACAGAAGATCGATGGTCAATGATCTGCCATGATGCAAGATCTGACGGCTTGGTCGGATGACGTCTTGGTGAAGGTTGATATTTGAAGGCAGGGCATAATCAGATGTGTGTTGTGAGCTACTGAAACACATAATACCACACCGATGGCTACTTTaaatctgtcctctctctgagaTGGTGGTGTCGACATCATCTGACCTATAGAGGGAGTCCCCATGCCCTAGTTCATATTGGCGGACATATTTCCAggctgctgttactgctgctttTTGAAAAGCCTCCTACCGTTCCCTGCCTCAACCAAGTGAACTGATGAAGTGATTTACGCTTCACTCATTTTTCTATGCAATTTACAAAAACATGTCTTAGCCGGCGCTTACCTACTTTCCATTTTATTTTCAGAAAGGACTTTTAAAAAGTATTATGATGATGTACGTGAGTGATCACACGGCCACCAGagtatttattgaaaatgaatatTGTTCTTAATTTACatgtgtatagatatatataataaagaGTTTTTATTCACCAGGCTTTTAAACTGCTTTGACACAGCTATTTGAGGGTACTGCTCTGGTGTCTTGAGTTATGTGTGGTGGCTCTGAAGTACTGGTGGAAGAGAGTGTGTAGTGCAGATTGAGCTTGGGCTGCATTTAGACAGATCAGAATTGGCCTGCCTGTTTCTCACTAATTGCTATTTGGAccaatcagatctttttcagagctgatctggtcaaaagacaaatttagtgaaaaatatcagaatttgtctgcctgtctaaacgcagccaatGAGTTGTCTGCGTGGTGACGCTAATGCTAGAGCGCTACAAATCAAAGTGAGTGCAGTGGACTAAATGCCATGGGACAGATGAGAGAGTGAGCTAGTATGGAGTTTTGGCTGGAGGAGGAAAAGATGAGGTATAGAAATACAATGATTAGAATGGGCACATGTAAGTATTTCGTAAGACGTTGATGACCAAACAAGATATGGATTTTGTGTTGGTACTGTGCAGTATGCTGCGTTTGGATCTGACTCAACACATGTACAGTATTGCTGACAGTCAATGATTTTTAACGAGGTCGACCCATTCTGTTCATTTTATTTCTACCTTTCTGATGTATTGAATGTGGCAGGCAGCTAACTGAGCTGTCTCCTCTGCGTTCTTCACTTTGCCCCTAATTATACCAACGCACAAccggtgtgtctctctcctgtatcATTCTGACGTCTTTTCCATTCACAGAATGAGAAATAGTGGCGTTGTTACAAAACCTTGATGACATGTGAAGAGATGTTTTCTTAGAGTATAAAATAAACTGACAAGAACATCTAGTCAAAAGCTTTTGAAACACCTAATGCCTTAACTGTAATAAGTTTGTACAGAGCCCTGTTTTATAACAACGTTGGAGTTGAGTCATGACTGTGAATTGTTAAAGCATGTTTGTGTGATTTCAGTTGGAGAGAAATGCCACATCAGCCCTCAAAAGACCTTTGAACGCCAGTGAGtgtcctgggtcatgttcattagacaCCAAATGGGAGATAAAGACTGAAACGTgaagggactacctggacttgttTTCAATTTCTGTTAATGTTTTATAACATTTCACtatggtgtgccctaatgaatatgaccctgaaTTATGTGACATCACATGACTGGTGTCAACCAGGAAGTGAAACTACTTAGCCTACCTCATTGGTCAGTTTAATGTTGCTCGAGCCAGCATAAATAACATTACTACACTAAAAAGCTGGTTTGGACATAAAGAATGGCAAATTAATAAGATTTTATAGAAATATGCTATGTAAGAATGTCCTCCAAAGACATTTGATAATAAGTATCCTTTCAATACATTGCTCTGCGGAAGTTGTTTCTTTTCACAAATGACATCTGATTTTAAAATGTGTTAGGAGTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACGGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGTACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGTACTATGAACTGACTTGGTTTGCTGTCTGTACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGGTTTGCTGTCTGGACTGTACTATGAACTGACTTGGTTTGCTGTCTGGACTGCACTATGAACTGACTTGTGTTTCCGTGTCCATACGCCAGCTCCATTCTCCAGGTAACAAAGAGTGTGACATACATTATTTCCTTTGATCAAGCTACAAGAATGGACAAAAAAGCTAGTTGAAATTGCAAATTAAGCTTCGATAAGTTAGTTGTGTCAGTTGAGTTCAATTAAGTCAATTGGATTGTATGATACAGGAGGAAGAGTTGGTGTGTTGTTCACTATGGTGGCTGTTTTTACTGGTGACTGACTGTCTGAAATCATGGCACTTCTACAGAGAGATTTTATGAGAAAGTTTATGGATGGAGGAAATTGAAAGAATGAGGTTCCATCAACATTGCAATAAAACTATTCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357073 lncRNA upstream 2002 57017476 ~ 57017700 (+) True G1189804
TU1357072 lncRNA upstream 5856 57013576 ~ 57013846 (+) True G1189803
TU1357071 lncRNA upstream 6785 57012691 ~ 57012917 (+) True G1189802
TU1357068 lncRNA upstream 12439 57007040 ~ 57007263 (+) True G1189799
TU1357064 lncRNA upstream 29360 56990030 ~ 56990342 (+) True G1189795
TU1357086 lncRNA downstream 20248 57047988 ~ 57048481 (+) True G1189816
TU1357089 lncRNA downstream 26420 57054160 ~ 57054390 (+) True G1189818
TU1357098 lncRNA downstream 29228 57056968 ~ 57057222 (+) True G1189822
TU1357100 lncRNA downstream 29810 57057550 ~ 57058011 (+) True G1189823
TU1357109 lncRNA downstream 46845 57074585 ~ 57074861 (+) True G1189832
XM_036941601.1 mRNA upstream 455 57008000 ~ 57019247 (+) True LOC110517037
XR_005035611.1 mRNA upstream 56685 56960598 ~ 56963017 (+) True LOC110486865
XM_036941591.1 mRNA upstream 100655 56688583 ~ 56919047 (+) False LOC118938331
XM_036939771.1 mRNA upstream 339838 56678602 ~ 56679864 (+) True LOC118938096
XM_036941590.1 mRNA upstream 345387 56596621 ~ 56674315 (+) True LOC110538765
XM_021558689.2 mRNA downstream 21192 57048932 ~ 57053449 (+) False LOC110486862
XM_036941603.1 mRNA downstream 21192 57048932 ~ 57053449 (+) True LOC110486862
XM_036941607.1 mRNA downstream 58108 57085848 ~ 57089925 (+) False LOC110486876
XM_036941606.1 mRNA downstream 58109 57085849 ~ 57089925 (+) False LOC110486876
XM_036941609.1 mRNA downstream 58114 57085854 ~ 57089925 (+) False LOC110486876
TU1356914 other upstream 94095 56877928 ~ 56925607 (+) True G1189675
TU1356992 other upstream 182706 56836416 ~ 56836996 (+) True G1189738
TU1356156 other upstream 1080345 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1653386 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1897083 55121261 ~ 55122619 (+) True G1188386
TU1357093 other downstream 26713 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 26727 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 26727 57054467 ~ 57055617 (+) False G1189819
TU1357092 other downstream 26727 57054467 ~ 57055617 (+) False G1189819
TU1357094 other downstream 26727 57054467 ~ 57055403 (+) True G1189819

Expression Profile