RNA id: XM_036941603.1


Basic Information

Item Value
RNA id XM_036941603.1
length 2225
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC110486862
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57048932 ~ 57053449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTGTTGGCCATTTGAGCTCCAGTCAGTTAGTTAGGAATACACATCTCCATAGGACTTTACGCATCTAGGCTTTTTAATGACTAACATGGAGGAGCAACGGTATCCGGTTAATATCCGACTGATTGGAGTAATGCACAAGGAGAAAAGCAAAATGTACATGACATCGGTGCTTTGGTCAGATCAGAATGACATCATTGTTTACAGAACCTTCAAGGACTTCAAGACACTTAATGCCAAACTTTTTATCCAAAACAGGAACAAATGAAGAAGAAATTCCCACCTGCGAACCCACTTAAAAAATCGGACAGAATTATTCCTAGATTTCGAGACTGGAGGATGAAGATTAACACAAAGAATAATGGTCCAAGCAAGTCGGTGGTCCAGCTCAAGTTTTTGGAGAAATACTGCAGCGAGCTCCTCAGCTGTGACCCGCGCGTCTCACAATGTCCTGAACTCATCCGGTACTTCCACCCCAAGGACCAAGATCTACAGCCAGAGTTTGCCAAGAATAGTATCATGATCATGCCTTCAGAGGATTCCGCTGGACATGACAAGAGTGTCAACATTGGAAACGTTACGCAGCCGTTCGTAACAGAGGCATACCGGTGCATGGCACCTTATGAGACCAAAGACACCAAGAACCGGCCGTTCAAAGTGGCCGTGGACGAAAACTTGGACGTGCTCATCAAAGACAAAGCAGGCTGGTGGCTGGTGGAGAATGAGGACAAGCGTATGGCCTGGTTCCCTGCTCCATACCTGGAGAAGGTAGAGGGGAATGAGGATGACGATAGTGACGAGTCCTATGGAGAAAGTGTGCTGTACAGTGCTGTCAGAAGCTACAAAGCCACAAATAGAGACGAGGTGTCTATGGACATTGGCTCAGTGGTGGAAGTCCTGCAGAAGTCTGACAATGGCTGGTGGCTGATCAGATACAACGGCAAGAGCGGCTTCGTACCTGCCATGTACCTGCAGCCCTACAACAACCCCCGTGTCCGCCTGGCGGCTCTCAACCTGGCCCAGCTACAGGTCCACAGCTCCAGCTCTGACCACACGCTGGCCGGACACTCCCACGAGCGCAGCCATTCCCAAGGCAACATCCTGCAGCCGCCCAGCTCCCAACCTTCCACACCAAATCAGCTCAAGCCTACCGACAAGCTCAAGTCTCATTCTTTTAATGTTCTAACTGTGCCTCGGCTTAGCCCTTCACCTGTGATGGTCACCACCCCCGCCCCGGCATACCCTAGCAAGGGCACTCCAATGCCTACTATCATGGTGGAGGTGGATGGGGAGATGGATAGACGCAAGCGCAGCCTCGCCGGCAGCATGGGAAGCGAGGGCAGCATGGGAAGCGAGGGCAGTGACTTCAGCGACGACCTCAGTTCGTCATCCTGCAGCTCGTCCCTCAACCTGAGCCGCGCCGACATGGACGAGCGTCTCCGGCGCGCCCGCACACCGCCGCCCATGGTGGCCGACCGTCTCAACCCCGACAGCGGCGTGTTGGAGGGGAGGATGGTCCACGGAAGATCTGACCCAAACATGTTCAAGATGGCCCCAACCACCCCCAAGGTGCCCCCCAGGCCCAGGGTGCAGGAGATCCTGACACGCTGCACTACAGTCACGCGCAAGAACGCCTCCAAAGCCAAGCTGTCGCCAGCGCCTGCTGTGATACTGAGCCGCTAAATTGGAGCAGTGTTGACCCAAAATGGTGGTGGGTCCACTGATCCCACTGATGAGTCATGGGTAGCCAGTTCCTCCTTAGCCTTTTAAAACCGAGGGTGAAGACTGGGTTGTGGCCAGGACATGTGGTGTGGTGTCTTGATGGATTCCAGGAAGAATCTAAAGGCTTTAGCACAGAAAGTCACTGTACTAGAAGCCGGACTGTGGGACTTATCCGTTATGAAGTTACCTGAACATGATTACACTGTGTTTTAAAGTGTTTAACTGCCTTGGGGCTGGTCATGTAACCATGAGTTGTGATATGGGAGGAAGAATCATACGTTACTGTAATACTCTGAGTCACATATTGagtctttatttttttaatgtggaAGTTTACTTCTTGCTCTGTTCGTCAGGCCTACTTCCATGCACCTGGAGATGGATACTGATAGCTGCattgtaaacattattttaatgCTGTCTATTAATTCAGGATTTATTTTGTGGATGAACAAATATTACGGTTAGGGGTTTACTGTCATTTGTCTACATTCCTGTTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357086 lncRNA upstream 451 57047988 ~ 57048481 (+) True G1189816
TU1357070 lncRNA upstream 21191 57027047 ~ 57027741 (+) True LOC110516169
TU1357073 lncRNA upstream 31232 57017476 ~ 57017700 (+) True G1189804
TU1357072 lncRNA upstream 35086 57013576 ~ 57013846 (+) True G1189803
TU1357071 lncRNA upstream 36015 57012691 ~ 57012917 (+) True G1189802
TU1357089 lncRNA downstream 711 57054160 ~ 57054390 (+) True G1189818
TU1357098 lncRNA downstream 3519 57056968 ~ 57057222 (+) True G1189822
TU1357100 lncRNA downstream 4101 57057550 ~ 57058011 (+) True G1189823
TU1357109 lncRNA downstream 21136 57074585 ~ 57074861 (+) True G1189832
TU1357111 lncRNA downstream 22419 57075868 ~ 57079580 (+) False G1189833
XM_036941602.1 mRNA upstream 21192 57019702 ~ 57027740 (+) False LOC110516169
XM_036941601.1 mRNA upstream 29685 57008000 ~ 57019247 (+) True LOC110517037
XR_005035611.1 mRNA upstream 85915 56960598 ~ 56963017 (+) True LOC110486865
XM_036941591.1 mRNA upstream 129885 56688583 ~ 56919047 (+) False LOC118938331
XM_036939771.1 mRNA upstream 369068 56678602 ~ 56679864 (+) True LOC118938096
XM_036941607.1 mRNA downstream 32399 57085848 ~ 57089925 (+) False LOC110486876
XM_036941606.1 mRNA downstream 32400 57085849 ~ 57089925 (+) False LOC110486876
XM_036941609.1 mRNA downstream 32405 57085854 ~ 57089925 (+) False LOC110486876
XM_036941608.1 mRNA downstream 32407 57085856 ~ 57089925 (+) True LOC110486876
XM_036941612.1 mRNA downstream 36852 57090301 ~ 57092931 (+) False LOC110515850
TU1356914 other upstream 123325 56877928 ~ 56925607 (+) True G1189675
TU1356992 other upstream 211936 56836416 ~ 56836996 (+) True G1189738
TU1356156 other upstream 1109575 55938472 ~ 55939357 (+) True G1189040
TU1355596 other upstream 1682616 55340724 ~ 55366316 (+) True LOC110539040
TU1355362 other upstream 1926313 55121261 ~ 55122619 (+) True G1188386
TU1357093 other downstream 1004 57054453 ~ 57055403 (+) False G1189819
TU1357090 other downstream 1018 57054467 ~ 57055403 (+) False G1189819
TU1357091 other downstream 1018 57054467 ~ 57055617 (+) False G1189819
TU1357092 other downstream 1018 57054467 ~ 57055617 (+) False G1189819
TU1357094 other downstream 1018 57054467 ~ 57055403 (+) True G1189819

Expression Profile