RNA id: XM_036941625.1


Basic Information

Item Value
RNA id XM_036941625.1
length 1385
RNA type mRNA
GC content 0.48
exon number 7
gene id LOC110486895
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57209985 ~ 57225363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGATAATTTACTGTAAGCCAACTATTTGAAGCCATAAGTGAAAGATCTGAGTAACGATTTGGTCAGCCTGTTTTTTACAGATAAATCCCATTTTACATGTTAAGACACTTCCAAAGCACTTTTATAATAATGTCCACATGGGGGGGCTGATACCGTCTGGAACACATTCGGCGTGGGAATGAGTTGCCCCCTCCTTCCCACTGCTGGGAACAGTCAAACGAGGCTGAACCACAAAGTGAAAGTAATTTCTTAGCTCGTAAGATTTGCCACGAGGACTGGACTATAGGGAGATTGGAATCAAATTGTGTGAACCCTTTCCTGTGGAGAGACCACAGTTTCACAGAACCCCTGTTTGTTTTTCTACTAAGGAGAAAGGCCTTAACATGGCATTAGTCTTCAGCTTGTCCACTCATGTTTCTCCTCATCACTGGGATGGAGACATCCAAAAGTCTAAGTCAGGGCCCAGAGTTGAAGCAGGTCATCCAGGTGGACTCTGGGAAGGATGCAGTCCTGGAGTGCTCTTTGAACTTCAATGGGATATCTCCTGGTTGCAGCTGAACCCAAAATATCAGCTTCCCATGCCACCTGCCAATGAGAAAGACAAAGTTGTGTCCCTGTTGGTCAAAGAAACCCAGCCTGAAGACGAGGGTCCGTATGAGTGTGTGGTGAACACTGACAGTGGAATCACACATTGTAACTTCATGCTGAAGGTCACAGGTAACCTCACAGTTCAGCTCACAGtgttacagtaCGAGACCAGCACTGAAAAGGAGATTCCAAAGAACAGTTACATGAGTGTGGCTGCTGTATGTGTGGTAGTAGGCTCTCTTGCCATTGGACTGCTGCTTCTCAAGCTGTTTCAAGCCAGAAGACTCAGACAAGATGAACCAGTGACACAGGAAGACTCTGTTGTGGCAGAAGAGCCTGAGGATACAGCAGTCCCAGCAGAGCACCAGGACAGGACTGTTTCCGTAGCGTCGGAGTgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggagtgttaccaggAGTGTTACGATTCTGGCACTGTAAttaaaagtattcaacccctgtagatttcttcacattttgttacaatgaGGAATACAAATTGATTTAACTGTTATTCTGGAGATGGGattttgtcctgtgttttggtggtggggagtgcagacagggctggagagagctggctgTGGTTATGTCCTGTGTTTTGGTGGTGGGGAGTGCAGGCAGggctggagagagctggctggggttttgtcctgtgttttggtggtggggagtgcaggcagggctggagagagctggttggggttttgtcctgtgttttggtggtggggagtgcaggcagggctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357185 lncRNA upstream 1058 57205873 ~ 57208927 (+) True G1189901
TU1357078 lncRNA upstream 54005 57154517 ~ 57155980 (+) True LOC110486874
TU1357118 lncRNA upstream 101903 57107629 ~ 57108082 (+) True G1189840
TU1357111 lncRNA upstream 130405 57075868 ~ 57079580 (+) False G1189833
TU1357189 lncRNA downstream 2921 57217534 ~ 57255172 (+) True G1189904
TU1357145 lncRNA downstream 62359 57276972 ~ 57278622 (+) True G1189866
TU1357250 lncRNA downstream 117146 57331759 ~ 57367492 (+) True G1189949
TU1357283 lncRNA downstream 200623 57415236 ~ 57416120 (+) False G1189978
TU1357284 lncRNA downstream 200884 57415497 ~ 57416242 (+) True G1189978
XM_036941620.1 mRNA upstream 86 57196436 ~ 57209899 (+) False LOC110486888
XM_036941621.1 mRNA upstream 86 57196436 ~ 57209899 (+) True LOC110486888
XM_021558745.2 mRNA upstream 14207 57190102 ~ 57195778 (+) False LOC110486893
XM_036941618.1 mRNA upstream 14207 57190347 ~ 57195778 (+) True LOC110486893
XM_036941613.1 mRNA upstream 35227 57164219 ~ 57174758 (+) True LOC110486867
XM_036941633.1 mRNA downstream 10962 57225575 ~ 57236988 (+) False LOC118936313
XM_036941634.1 mRNA downstream 10962 57225575 ~ 57236988 (+) False LOC118936313
XM_036941632.1 mRNA downstream 10962 57225575 ~ 57243852 (+) False LOC118936313
XM_021558751.2 mRNA downstream 10963 57225576 ~ 57243852 (+) True LOC118936313
XR_005035613.1 mRNA downstream 36290 57250903 ~ 57261741 (+) False LOC110486898
TU1357091 other upstream 154368 57054467 ~ 57055617 (+) False G1189819
TU1357092 other upstream 154368 57054467 ~ 57055617 (+) False G1189819
TU1357093 other upstream 154582 57054453 ~ 57055403 (+) False G1189819
TU1357090 other upstream 154582 57054467 ~ 57055403 (+) False G1189819
TU1357094 other upstream 154582 57054467 ~ 57055403 (+) True G1189819
TU1357171 other downstream 381407 57596020 ~ 57640558 (+) True LOC110514101
TU1357163 other downstream 409060 57623673 ~ 57625405 (+) True LOC110486909
TU1358002 other downstream 750903 57965516 ~ 57994502 (+) False G1190568
TU1358009 other downstream 751269 57965882 ~ 57993981 (+) False G1190568
TU1358006 other downstream 763806 57978419 ~ 57993981 (+) False G1190568

Expression Profile