RNA id: TU1357171


Basic Information

Item Value
RNA id TU1357171
length 3113
RNA type TUCP
GC content 0.49
exon number 4
gene id LOC110514101
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57522756 ~ 57640558 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAGCACTCCTCCACCTGGGGAGGCAACTCCCTGGGCCTGGCCCAAGGCTGGAGCAGCTCCTACTCCTCggCTACCACATGGAGTACAGACAGCTCCAACAGGACCAGTAGCTGGTTGGTCCTGAGGAACCTCACTCCCCAGATAGACGGCTCCACCCTGCGGACGCTATGCATGCAGCACGGCCCCCTCATCACATTCCACCTCAACCTGACCCAGGGCAACGCATTGGTGCGCTACAGCTCCAAGGAGGAGGCCGCCAAGGCCCAGAAGTCCCTGCACATGTGCGTTCTGGGTAACACCACCATCCTGGCAGAGTTTGCTGGGGAGGAAGAGGTCCAGCGCTTCTTTGCACAGGGCCAGCAGCTAGCCTCAACTACCAGCTGGCAGGCTGACCCAGGTGTCAATCAGACGCGGATGGGTGGTTCCGGGCCCAGATCCTCGCACCCCATTGGCCACCCCCACTGGAACTCTGGCGGCAGCAGTGGCGGCATGGGAGGAGGTGGAGCCAAGACGGGGGGAGATCTGCTCTGGGGGGGCGTGCCCCAGTACTCCAGCCTATGGGGACCGCCCAGCGGAGAGGAGGGGCGGGTCATGGGGAGTCCTACTCCAATCAACACGCTGCTGCCTGGGGACCTGCTGAGTGGGGAGTCCATGTAGGACCACGTCACAGAGCTCCATGCTAGAAAAAGGAGGAATAGAATActacacagtactacatatatacatgtatacaaacagaagagcaaaaaccaagcaaatCAATGTGGTGATAATCAGTGTGGGTGGGATGATCGAGGGACAGACTTGAGGAGGACGAGGTGACTCTTCTGTGTCCACGCTGCTCACCCTCTTCCAATTtttgtttgttaaaaaaaaaaaaacatttcattttAGATTTGTTCGGCGAGAGGCTCTGGTTACAGTGTTTTACGTTTGGACTTTCGGAAAAGCACGAGTATGCCTTTGACTCAACCAACAAAGGAAGAGAAACATTTGAACTTTACTCTGAGACTATTTGTCATGTGAAACGTGTGTTTTAGACTAACTGCTTCAAACAACGAGCTGCCATCTTCAAAACTCCCATAATCCCTTGCTGCCTGGCAGCAGTCAATCCACACCTCAGAGAAACCATAGATACACGTCATTCCCAAAGCCCATCCCCTTCCTGTCGGGAAGGTTCCAGAACTTTCTACCAGTCCGGAATTTctcttgtttgttttttctcaGCACTAATTACTAGCCTTAACCTCCCCCCAGGCCTCGTTCCCCTCCTTTATTCACTGATTCTCACTCACTCTGTACTTACTGAAGAAAACGTACTGAGAATTGCACACTCATTTCTGAGCCAGCGAAAACCGAGGGGAGAGGATGTGCTTGTAAGAGACTGAGGCCACAGCAGCTCTCAACTGGAATCCTCGGCGGTCACAAGCACATTATTCAGTCCCCACCACTCTTAAAGGGATTGATGATGCAAACGCAAAAGATCTTCGCCTTGTTCATTTTAAAGCCATTTTTGTCATGGAGGAGTGTTGTTTCCCCGAACCATTCGCAAAATAAGCGAAGAGAAATATGACTCCAGTGTGTGAATATTTCCGgggtgtgtgtttacatgtgtgtatGACCGTCTTGTTGAAGTCTAGTAACCACTGCTCTATGGAACTGTATCAAAACACTTGTTTTGAAATGCACCTCAACTCGTTTAAGGACGAACTTGTGCTCTGGTTCCCCCCCTTTCTGTGACTGTGGAAGACCTCAGTCGTTACCGTGGTCCACTAATCTCTCCTTTACACCAACACACCCTTTCATGTGACGTGCAATATAAGCCACAGACTACTCTCTACTACCGTCCACACCAAGTACTCCAAGGGTTTCTCTCACAAACCTCTTTCAAGAGCAGAGACAGAATCAGCAAGGACTCTCTATATCCATGCCCCCTGGGTGTGTGAGCTGGCTGGACCTACTTATCTGTGAAACACAAGGCTATACAACAAGCACTTGTTATTCAGTCTCACAGTGACGGACTAGAGGGGCACAGGGGTAAGGAAGGGGGTGTATGGGGCATTATACCAAAACGAGACTTGTTCCTTATTTACCCATAAGACGAAACCATGCATTTTTTTCTTTCCATtgttgtatttggtacaaaaaAGTATGGAACAAATATAGAACTGCTTTATAAAAAGAGGTGGTTTATCATAGCACTTAGCAAAGAGCGTCAAGCTCCTTCACTTCAATGCCAACGAATCAGAAGAGGAGAAGCGTGTGACACTGAAAAACTCtaggaaaaaaacaacaacaaaaaaacaagcaaTCTACTACAACGTGGCTTCTGTGTAACTCTTTATGAactgtaacagatgtgaaactaTTTTCAGTTttcatattgttttttttattttagaccTTCCCTTTCTCGCTGTCTGTGTGTGGTACCAGGAACCTTTCTGAAATGGTAGCAAAATGAAGGGATGGAaaggaaagaaagaatgaaagactTTGGGCACTATCGGGTGTGAGACCCCGACGCACTCGCCTGTTTTCCCTTTCACTCTATCAAAGTAAATATCACTGTTACATGACTGAAAATCTTTAGCCTTGTTGTCTGGAGACGCAACTAGATGCTGCGGCAATGTTCTGCAGGGGGATCGCCATTTTCTCTCTGGCTCGCAACCTTTTTCACAAGCCCTGCCAACCTGTATGATCGTGTGGCCATTGAGTGCCTGCCTGCTGTGGAGGGGGTGGACTTCATAGAAGCTCCACACCAGGCCTCTGCAGCAGCTCTCACCCCAccttcccctctccatccctggGGAGCCTCACAGACTGGTTCCCCCAGGGACCTCCCGGGCTTCTGGTGCCCAAGAGCAGCTGTCAGAACTGTCCGATTCGtattaactactactactgcgCCAGCTTCTGTTgttcatcacctccactctatccctctctctatccctctctcttctgttgttcatcacctccactctatccctctctcttctgttgttcatcacctccactctatccctctctctgttgttcatcacctccactctatcccgctctctatccctctctcttctgttgttcatcacctccataaaataacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357168 lncRNA upstream 47034 57536003 ~ 57548986 (+) False LOC110514101
TU1357324 lncRNA upstream 79303 57511651 ~ 57516717 (+) True G1190014
TU1357284 lncRNA upstream 179778 57415497 ~ 57416242 (+) True G1189978
TU1357283 lncRNA upstream 179900 57415236 ~ 57416120 (+) False G1189978
TU1357250 lncRNA upstream 228528 57331759 ~ 57367492 (+) True G1189949
TU1357356 lncRNA downstream 12347 57652905 ~ 57655166 (+) True c13h17orf75
TU1357382 lncRNA downstream 45776 57686334 ~ 57687163 (+) True G1190066
TU1357357 lncRNA downstream 47394 57687952 ~ 57688623 (+) True G1190041
TU1357396 lncRNA downstream 61350 57701908 ~ 57702360 (+) True G1190074
TU1357392 lncRNA downstream 72817 57713375 ~ 57713983 (+) True G1190072
XM_036941638.1 mRNA upstream 136559 57303445 ~ 57459461 (+) False LOC110516540
XM_036941643.1 mRNA upstream 136559 57338655 ~ 57459461 (+) False LOC110516540
XM_036941642.1 mRNA upstream 136559 57361050 ~ 57459461 (+) False LOC110516540
XM_036941639.1 mRNA upstream 136559 57376281 ~ 57459461 (+) False LOC110516540
XM_036941640.1 mRNA upstream 136559 57376687 ~ 57459461 (+) False LOC110516540
XM_036941661.1 mRNA downstream 87631 57728189 ~ 57736384 (+) False LOC110486914
XM_036941662.1 mRNA downstream 87632 57728190 ~ 57736459 (+) False LOC110486914
XM_036941658.1 mRNA downstream 87632 57728190 ~ 57739064 (+) False LOC110486914
XM_036941660.1 mRNA downstream 87856 57728414 ~ 57739064 (+) True LOC110486914
NM_001281348.1 mRNA downstream 130882 57771440 ~ 57773246 (+) True rln3a
TU1357091 other upstream 540403 57054467 ~ 57055617 (+) False G1189819
TU1357092 other upstream 540403 57054467 ~ 57055617 (+) False G1189819
TU1357093 other upstream 540617 57054453 ~ 57055403 (+) False G1189819
TU1357090 other upstream 540617 57054467 ~ 57055403 (+) False G1189819
TU1357094 other upstream 540617 57054467 ~ 57055403 (+) True G1189819
TU1358002 other downstream 324958 57965516 ~ 57994502 (+) False G1190568
TU1358009 other downstream 325324 57965882 ~ 57993981 (+) False G1190568
TU1358006 other downstream 337861 57978419 ~ 57993981 (+) False G1190568
TU1358008 other downstream 337861 57978419 ~ 57993981 (+) True G1190568
TU1358173 other downstream 400328 58040886 ~ 58041295 (+) True G1190689

Expression Profile