RNA id: XM_036941652.1


Basic Information

Item Value
RNA id XM_036941652.1
length 3509
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118936526
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 57598591 ~ 57612663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATAGGTGGGAGAACTATACATGTACACAATGCATAACCGCAGAGCTTCACAGTTTAGTAGCCTATAGGAAACAGTCCTCCTCACATGATTCAACATTAGGGTGATATGCTAGAGCAGGTCATGTGGATCAATACATAAGTAAAACCATGAAGACCAGCTGGTATTTGATTTGGATATTCATTCTCACACTGATGATCAGCACTGCCCGTCAGGAGGTGATGTACATAAAGGGCTCAGAGGGGCAGTCAGTGGATCTCTCCTGTACACCTGAGCAGACAGGTGGAGCCCCTGTCAGTCTCTACTTGACCCACAGGTGTGTCCGGCCTGAGAGGGAGGTGCTGTTCATGGCCAAGGACCGGAGTCCCGGGACGGTGAGGGTTAACCGGCTGTACAAAGATCGTCTGAAGGTCACAGGCGGATTGAACTCTGACCTGCTCAACGTGACCATAGCCCATCTTCAGCGCACAGACACAGGCCTGTACATCTGTGAGTTTGTCTACACAGCTGACCCCTCTGACCGAACAGTCTCTGGCAGTCTGGAATTCTTCCTGTTTGTTGACGGGACAGagagtgtgtgtcagtgctcCAGCTACCCCCCACTGATCTacaccatctctgcagcagcTGGCCTGCTTCTCCTCGTCCTCATCTGCCTGTGTGCAGTAGAGTGTGCTAAGCTGAGAAAATGTCATAAAACACAAGCCCCCATCCCCATCTATGAGGAAATGAACAGTGGGTGTCGAGGAGCTGGAAGTGCCCAAAATAACCATCCTGTGCCTACACACCTGGAGGAAACAGAGTCCCCTGTGTACGCCAACCCCCAGGCCAGACAAGCACAGGAGAACCACTACGCCAGCCCCCGGCATATCACTCTGAAGCCCTGAGCGAACCCCTAATGTTTTTTAAAGGGGGAGTGGATGGCAGAAATAACAGTACCAGAGTTTCAGATACATGTTCTAACCCACTGTGACAGGTGGTGGGAAAGAGTTGGACTGTCATCATTGCTTTTTCAAGTGTGTGCAAGATCGTAAACTATTGGTCCCACCTCACCTCTCTTTTCTACAGTGTCAAGGAGTCACCCAACTATGGTTGCCCAACAAACCCACCTACAGGATGAGAATGGAAAAGACTGAGAGCTAGTACATAGGTCACTGTGCCTGTATAGGTGTACTAGTGGTGCTACCCTCAGAACAGGATCTAATAGGGAAAACTCCAATCTGCAAACTAATTGACAAACACCAACATCAAGAACTGACCACAACACTCTTTAACAGACCAGAAAAAAACTGCAATTTTATTAATAGATGAAAGAAGCTCCATAGTTCATGAAAACATTGTTTTCGGTGCATGTCATTAAACAATCACATTCTATGAGGAGAAAGAGATACATTGAGAAAATAAATCATTACAAGCCACTGACTCTTCTTTAAATCTCAGTACAGACATTTTTCCTTAATATTTCAAAACCAAAAAAGGCAAAAAGCAGCCCTAACCCCAAATCCCCGTCCCACCCATCATcccaacaaaaacaaaataactgAATGAAACGACAGAACATACAGATGGGGTGACGGGCACAGTGCTAAAGAGTAAGACGCTCATTGGTTTAGGAATACACAGTATAGTAATGTAGCGCAAGGTCAATCTGAATACACAGCATAGCCATGTAGCGCGAGGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGTGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGAGGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGTAATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGAGGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGTAATGTAGCGCGAGGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGAGGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATATGAATACACAGTATAGCCATGTAGCGCAATGTCAATCTGAATACACAGTATAGCCATGTAGCGCAATGTCAATCTGAATACACAGCATAGCCATGTAGCGCGATGTTAATCTGAATACACAGCATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATACACAGTATAGCCATGTAGCGCGATGTCAATCTGAATTAAAGAAGCCGGATGTTGGGGTCTTGGGGTGGGGGGGTAGGCCTACCAACCAAATAAAAACAGTGGATCCCAAAACCCCTGCATAAAATGTGCCTTGTACCCATCAAAGCCCCCCGCCCCAAACTTGTGCATAGATCATGATCCTTTACAACCAGCTAGTTTTAAAAACATCAGTTATTTTCCCTGTTCTTTAATATCCGACAtaagagagaatgacagaggaaagagagtaaTGCACAATGGTCCTTATTCAGTCAGGACAGGACTTCTAAGAAAATACAATAAAGTTTCAAAACATACAGAATTTGCATGTTCTTTCACGGTCATTTTTTTATAACAATCAAAATCAAATGataattttgtttttaaatgtaaagcaattttaataaaaatgtatataaagCACTCCATTTTTTGTAAGTTCATTTAAAGCCCATTATTTGgttaatatgtacagtgccttcataaagtattcacagccttcactttttccacattttgttgttacttaGTGGGATTTTTTGGGCAATGATATACACAATTCTCTCATTTCAAAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1357835 lncRNA downstream 1463 57598591 ~ 57606557 (-) False LOC118936526
TU1357801 lncRNA downstream 69194 57538367 ~ 57538826 (-) True G1190419
TU1357765 lncRNA downstream 148569 57456707 ~ 57459451 (-) False G1190386
TU1357766 lncRNA downstream 148569 57456707 ~ 57459451 (-) True G1190386
TU1357676 lncRNA downstream 322928 57264985 ~ 57285092 (-) True G1190303
TU1357844 lncRNA upstream 85412 57698075 ~ 57698935 (-) False LOC110486915
TU1357841 lncRNA upstream 94526 57707189 ~ 57713079 (-) True LOC110486913
TU1357877 lncRNA upstream 124682 57737345 ~ 57739055 (-) True G1190481
TU1358029 lncRNA upstream 188582 57801245 ~ 57801960 (-) True G1190580
TU1358026 lncRNA upstream 193317 57805980 ~ 57806220 (-) True G1190578
XM_036941616.1 mRNA downstream 418701 57174996 ~ 57189319 (-) True LOC110516439
XM_036941617.1 mRNA downstream 444001 57161975 ~ 57164019 (-) True LOC110486881
XM_036939772.1 mRNA downstream 478578 57112909 ~ 57129442 (-) True LOC110485244
NM_001160603.2 mRNA downstream 508242 57094312 ~ 57099778 (-) True nduba
XM_036941604.1 mRNA downstream 522499 57054453 ~ 57085521 (-) False LOC110486894
XM_036941669.1 mRNA upstream 47244 57659907 ~ 57664396 (-) True LOC118938332
XM_036941665.1 mRNA upstream 53552 57666215 ~ 57697820 (-) False LOC110486912
XM_036941667.1 mRNA upstream 53552 57666215 ~ 57697821 (-) False LOC110486912
XM_036941663.1 mRNA upstream 57943 57670606 ~ 57697821 (-) False LOC110486912
XM_036941664.1 mRNA upstream 58414 57671077 ~ 57697821 (-) False LOC110486912
TU1357787 other downstream 108865 57495988 ~ 57499155 (-) True G1190405
TU1357558 other downstream 518105 57089171 ~ 57089915 (-) True G1190199
TU1357552 other downstream 522549 57080817 ~ 57085471 (-) True LOC110486894
TU1356891 other downstream 933782 56670293 ~ 56674238 (-) False G1189660
TU1356892 other downstream 933782 56670293 ~ 56674238 (-) True G1189660
TU1357845 other upstream 86588 57699251 ~ 57701824 (-) False LOC110486915
TU1357843 other upstream 89873 57702536 ~ 57706790 (-) True LOC110486915
TU1358104 other upstream 353474 57966137 ~ 57994024 (-) False G1190628
TU1358103 other upstream 379238 57991901 ~ 57994024 (-) True G1190628
TU1358845 other upstream 974662 58587325 ~ 58588526 (-) True LOC110514412