RNA id: XM_036941686.1


Basic Information

Item Value
RNA id XM_036941686.1
length 1880
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110486938
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58131285 ~ 58195479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTTggttttcctcctccctctcatacactctcctcctcccaccactTCTTCTTCGCTCTTAAACCAAAGGTACCTCAGTCTTTCTTTTCTCCCAGGACCGGATAGTTCCAGGTCCTCAGTCCAGTCGTTCACCCCAGGAATCCTTCAGGTGGAGATCAGTCGAGATGGAGAAAGGTTATCCCGGGGATGGTACTTCTGCCCCTCACCCAGAACCTCCCATGAACTATGGGGGGATAGCCACGGGCCAGGGCCCCCAGCCAGGCTTGTACCCCCAGCCCCCAGGCGGATATCCTGCCTCCCCTGGTCCTCCACAACCAGGGTTCCAGCCTGGTCCCTACCAGGGAGGTCCCCAAGCAGGTGTGTACACACCTCCACCACAGTACACCTCTGGACCAGGTGGACCGGTGCCAGTTGtgACCCAGGTAATAATGACTCCTAGCCTGATGGAGGTCGGAGGTTCGACCATGTGTCCCCACTGCCAGCAGCACGTGGTCACCAAGACAGAGACCAACTCTGGCCTGCTCACCTGGCTTATCTGTGGTGGCCTCTTCATTGTTGGGTGCTGGCCATGCTGCGCCATCCCTTTCTGTGTAGACTCATGTAAAGACGTGAATCACAGCTGTCCCAACTGCAACAATATCATCTACGTCTACAAACGCATTTGATATTCATTTGACCTGACTGTACTACCTTTATCTGAAGGACTGGGACATGGCACTTCAATCAAATCAACATTTCTGTAAATGTATGAGGTTCGTATTCACTAGGGCATGTGATGTTGGAAAATGTTTTACAACGAAGAAACAAAAACtcattcttattggacaagtccagataGTCCCTCTCtttttcagtccattttcttccatttggtgcctaatgaatacaacccagggGTAGCCAAAAGGGTTATGTCTATCCTATATAGTCCCTGAGCAGGTGGTGAGCTTCCCTCAGCTCCACAAAATACTacataatatatgccatttagcagatgcttttatccattTTTGTATGGGTTGTCCTAGCGGAAATTCAAACCCACAAGTGCCAAGCTCCATCAGGTCCCTGGCCAGACTTGACCCTTGTAGTGACTACCAAAGAGAATCCTGATACCAAAGACTGGTAGTAGCTGCGCTATAGCTGTTTCACTGTAGTTCTGTACTCGTCTGAAGTCCATGAAAGTAAAGGAACTTCTAAACCACTCTACTTATTGTAATATTGATACATTGAGATGTATATATCACCATCACTTCTTATTGTAACATTGTCACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACCATCACTTCTTATTGTAACATTGTCACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACTTCTTATTGTAATATTGTTACATTGAGATGTATATATCACCATCACTTCTTATTGTAATATTGTTACATTGAGATGTGTATATCTCACCATCATACTTCTTATTGTAATATTGTTACATTGAGATGTTTTTGTTATTACACTCTTGCAGTCGTTCCCTCACCGATCTCGTTCTCTTTTTTCCTCTGAAAGTTCTACTACTCATTTGTCATAAAAGACCATTGTCAATAATTACAATGGATCTTATGGTTGTCTTTTCACTTCCTGTCTAGTTGCTCTGTAAAGCTCTGATTAAAGTTGTCTGTATTGAA

Function

GO: NA

KEGG:

id description
K19363 LITAF; lipopolysaccharide-induced tumor necrosis factor-alpha factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358296 lncRNA upstream 9987 58158895 ~ 58159125 (+) True G1190800
TU1358294 lncRNA upstream 18842 58149888 ~ 58150270 (+) True G1190798
TU1358209 lncRNA upstream 76422 58092044 ~ 58092690 (+) True G1190719
TU1358174 lncRNA upstream 126693 58042155 ~ 58042419 (+) True G1190690
TU1358161 lncRNA upstream 155079 58011720 ~ 58014033 (+) True G1190679
TU1358336 lncRNA downstream 2494 58197973 ~ 58198262 (+) True G1190832
TU1358346 lncRNA downstream 25666 58221145 ~ 58221381 (+) True G1190842
TU1358347 lncRNA downstream 26225 58221704 ~ 58222020 (+) True G1190843
TU1358348 lncRNA downstream 27190 58222669 ~ 58222875 (+) True G1190844
TU1358351 lncRNA downstream 28993 58224472 ~ 58224717 (+) True G1190847
XM_036941685.1 mRNA upstream 58918 58083262 ~ 58110194 (+) False LOC110485250
XR_005035614.1 mRNA upstream 58918 58083262 ~ 58110194 (+) True LOC110485250
XM_021558795.2 mRNA upstream 111069 58055025 ~ 58058043 (+) True LOC110486927
XM_036941684.1 mRNA upstream 116582 58049362 ~ 58052530 (+) True LOC110512521
XM_036941682.1 mRNA upstream 311118 57847447 ~ 57857994 (+) True LOC110486929
XM_036941695.1 mRNA downstream 90779 58286258 ~ 58295388 (+) True LOC110486945
XM_036941697.1 mRNA downstream 117277 58312756 ~ 58347543 (+) False LOC110514297
XM_036941696.1 mRNA downstream 117280 58312759 ~ 58347543 (+) False LOC110514297
XM_036941701.1 mRNA downstream 117288 58312767 ~ 58347543 (+) False LOC110514297
XM_036941700.1 mRNA downstream 119978 58315457 ~ 58347543 (+) False LOC110514297
TU1358173 other upstream 127817 58040886 ~ 58041295 (+) True G1190689
TU1358002 other upstream 174610 57965516 ~ 57994502 (+) False G1190568
TU1358638 other downstream 341348 58536827 ~ 58538719 (+) True LOC110538555
TU1359148 other downstream 1072592 59268071 ~ 59270262 (+) True G1191444
TU1359241 other downstream 1190693 59386172 ~ 59388776 (+) True G1191529
TU1359354 other downstream 1430356 59625835 ~ 59626661 (+) True G1191622
TU1359499 other downstream 1717619 59913098 ~ 59914246 (+) True LOC110486998

Expression Profile