RNA id: XM_036941712.1


Basic Information

Item Value
RNA id XM_036941712.1
length 3496
RNA type mRNA
GC content 0.55
exon number 14
gene id LOC110486947
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 58428372 ~ 58446189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGGTGCTGGGGAAAGAAATGGAACTGGGCCTAAATTATGTTGCTAGGAGGCGCTGTTGCGACCGGAAGAGGTCGATGTGATGAGGACCATTTGACACAAACCTGAAACAGAAAAGAGAAATTCACGATTCTGAAATTCTATAAGCAACAGAAACCATAAGACATACGACGCCAGGAGATATTCATTTGTCTTCAACTTTGTATTTAGGGGAAGAAAAGAGAAACACGGAGTCATTGGTTGTGGATGTCACGCTAGAAAATCAGGCCGTTTTGAGAGGCTGGAGCCCAAACAAGGACATGGAGAGTTACGAGGACTTCTGTCTGCGGAGCCTGGCCAGACTGCAGACGGAGAGCCAGGGGAAGAGCCAAGGCCAACAGACAGGTTGTGAGCCAACTGGTCCTGTGGAAGCTCTCTCCTTCATCCACTTCCATGGAAGGGCTGTGCTCTCCCCCTTGCTGAGTGTGGAGCAGCGCAGCGAGATGTCCCAGTACAGACAGAGGGCTGCCCAGCTGGAGGTGGACAGACATGCACTACGCAGCAGCAGCCTGCTGGCCAGGGTTCAGGACATCCTGGACAGTGCTCAGGTGGACAAAGTACCAGAGATGGAGGGTAAAATGGATCTACCAACTCCGCCATATTGCCTTTCCCCAAAACCTGAGACAGTGAATGGCTACACCCTGGTGACAGACTCCCCTGGGCTACCCaggggtggtggtgtggttgAGCTACACATTACGGATCGGCCCACCACCCCTCCACCTGAGTCTCCCATAGTCCTGAATGGGtacagggcagaggagagagagaagcagatagaggaggagaggtgggaggtagaggaggagatagggtGCGGACAGGATGTGAGTTTCCAGAGCCTTCTGAGGAGGTCGAGGGAGTATGTGGAGAGAGAGCAGGCCCAGAGGGGGTCAAAGGTGATCGGCAGGGTCACTTCCACCACCCTGTCTGCGGAGAGCCTCTCTGACAAGGAGAACGAGAGCCGCAGTCCTCTGGGAGAGATGAAATCTGAACAGGGGTACAGCCTGCGCCACAGTCCGCTAAACCCACCTCAGACCCAGGCCCACATCCAGCACCAGAGTCAGTATCCTGGCCAAGCGCAAGCCCAGTACCAGGCTGTGTGTGACCCATATGACTCTCGGTTTAGCTGCCTCTCATCTGGCCTCCCCGACCCTTATGCCCTCCTGCCCAGCCCTGAACCCAGCATGAGTCCCCGCCCCCACCGCCGCCAACCACGTCCAGTGTCCACTGGTAACATCATGATCTCCTTCCCCATTGGCTCGGCAGACCTCATCCCCAGAGGGCTAGTGGGGAGGCACCAGGAGAGCACTGTTGTCATGGCGACGGGGGTGATGAGGTCACCGGAACGGGGGTCAGGCGTCAGTGACGGTAGTAGTCGTCGTGGCAGCCAGTGTGGCACCAGCCCGGTCCAGGAGAAGAGCTGCAGCCCAGTCAGTACCTCCGGAACTGGTTCACATGGGCATCATGACATCATCAGCTCCGGGTTTCGCCGGCGCTGCCACACCCTAGACAGCCAGCTCCACTCCTCCCATTCTGCCTCAGGACCTGGCATGGACCGCAGCCAGGAGAGGCTCCCGCGCTTCATGGGGGGAGTGCCTCGTTTTGCCCCGAGCCGTAGGAGCCCCGCGGTCCCCCTGAATCAGTCCTATGAGGTGGAGAACCCCTCGGCAACGCTGATAAGGCCCCACGTGAGAcccttgacccctgacctctctcCTTGCCAGATGAGGCTGGATCCTGAGGGGCCTCAGGGGCCCCATGATGGACGGATCACACCCAGCTCTTCCCTAGAGGAGCAGGACAGTAAGACAGaggagACCCAGCGACGTGTGAGTGCTCTGGAGGAGATGCAGAGGCGTCTGGAGGAGGAGCATGCCCTGCAGATGTCTCTTCTCATGgctgaacaggagagagaacaacagCGCCTCTGTCAGGAGCTGGATGAGAAGGGGAAGAGGCTGAGAGAGCAGGGGTGTGGCCGGCTCCTGAGTGGGGACGGTGGACTCAGTCCTTTCTGCCCTGGCCTTAGCCCCACCCTGAGTGCTACTGATAGGTCACCTAGACACAGTGTACACAGCATGGgtttctCCTCTCCACTGAGCTCTAGtgatccctctccctccatgcaGCCTCCTGTCTACCTCTGGGGGCCCACCTGGGGGGCCAGCAAGCCCCGGGGAAGGCTCAGTCAgGTTGTGACAGTTGAACAGCAGAGGGCGCTGTGTCGTCTGGGAGCCATCAGTTGTGGGTTCCTCACCCGCAGACTGCTCCAGACAGAGAAGGTGAAACAGCTGCGCCAGACCATTCAGGACACGCAAGAGTTCATCTGCTCGTTCCAGACTGAAGCTCCACAGAAGAGGGGATCCATCTCAGCACAGGACCTGTCTCTGCAGGAGAGAGTCAGGGCACAGTTGCGTGCGGCTCGATATGACATCCATGACATCTTCTTTGAGATGCCCCTGGAGGAGAGGCTGGCTCTGCTGCAGCTGGACAGAGAGGTCCGCACAGAGAAGAAGCTACGAGAAATGGAGAAAGCCAAGAGTCCTAATgacagagtgctgtctgctgccACACAGAGGTCACTGGACAGGAAGAAGAGGGTGGGTGAGTCTCCAGGACAAGCCAGGAAAGTACAGAAGAAGCCAAAGAGCCCTCCCActaacaggaTCCTGAAGCCAAGTCAGGGTCAGAATGCCTCTGTCCCAGGTCAGCCAAACCGACAGGGtctgtctgtcaggagctgGTACAGAAATACCCCGGAGGACAGAGTGAGGCGCTCAGACAGCCTGAAGAAGCAGAACTCCCTGGGCTAACTGattcctccctcagtccctctatGAACCCTCACTccctgacccttgacctctgAGCCGTCTATCGGCCCCATGTTCCACTATGGTTCGACCACCACCAATGCTACtagtctctctaccctccctctgacctccctctaacctccctctgacctccctctaacctccctctgAAGGTTCAGTCCAGTGCTCTCTGCCCATCGAACACCCTACCAAATGTATTGTTACTATAGTTACATAGATTTTCTACTATTACAAACTTATAAACAGTTCATGTATCCCTTAGGTGTGAATGCTGCTGTGCACTCTTGTGCCAAGATAATTCATGCATTAATGCTGCTAGATAGCCATATTTGCTGCTTAACTTGCAAAGACTTTGTAGCTAGAGGCCTTCAGTAGTGGATATGTAGTAGGGAGAAGGACTCATGAAGAAGCATTACAAAAGTAAAGGAAGTAGATTCCATTAGTTAGCGGTCTGGATTGTCTTCTGACAGGTGGCGGCATTCCTCCTCTCattttttaatgtaaaaaaaatgtcatctttatttaaccaggcaagttagaacaaatccttatttacaaggacggcctaccccggccaaacccggacgacgctggccaagttagaacaaatccttat

Function

GO: NA

KEGG:

id description
K16453 CCP110, CEP110; centrosomal protein CEP110

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1358562 lncRNA upstream 2314 58425513 ~ 58426058 (+) True G1190995
TU1358561 lncRNA upstream 3935 58424131 ~ 58424437 (+) True G1190994
TU1358558 lncRNA upstream 9597 58418428 ~ 58418775 (+) True G1190991
TU1358557 lncRNA upstream 10180 58417904 ~ 58418192 (+) True G1190990
TU1358553 lncRNA upstream 15206 58412299 ~ 58413166 (+) True G1190986
TU1358582 lncRNA downstream 2219 58448408 ~ 58511397 (+) False G1191008
TU1358619 lncRNA downstream 46141 58492330 ~ 58570817 (+) True G1191042
TU1358580 lncRNA downstream 64351 58510540 ~ 58511397 (+) False G1191008
TU1358581 lncRNA downstream 64351 58510540 ~ 58511397 (+) True G1191008
TU1358618 lncRNA downstream 127745 58573934 ~ 58575704 (+) True G1191041
XM_036939774.1 mRNA upstream 79109 58348530 ~ 58349263 (+) True LOC118938097
XM_036941696.1 mRNA upstream 80829 58312759 ~ 58347543 (+) False LOC110514297
XM_036941716.1 mRNA downstream 75174 58521363 ~ 58557066 (+) False LOC110538555
XM_036941717.1 mRNA downstream 75174 58521363 ~ 58557066 (+) False LOC110538555
XM_036941718.1 mRNA downstream 75174 58521363 ~ 58557066 (+) False LOC110538555
XM_036941734.1 mRNA downstream 283502 58729691 ~ 58762694 (+) False LOC110518424
XM_036941735.1 mRNA downstream 283502 58729691 ~ 58762694 (+) False LOC110518424
TU1358173 other upstream 387077 58040886 ~ 58041295 (+) True G1190689
TU1358002 other upstream 433870 57965516 ~ 57994502 (+) False G1190568
TU1358638 other downstream 90638 58536827 ~ 58538719 (+) True LOC110538555
TU1359148 other downstream 821882 59268071 ~ 59270262 (+) True G1191444
TU1359241 other downstream 939983 59386172 ~ 59388776 (+) True G1191529
TU1359354 other downstream 1179646 59625835 ~ 59626661 (+) True G1191622
TU1359499 other downstream 1466909 59913098 ~ 59914246 (+) True LOC110486998

Expression Profile