RNA id: XM_021559373.2



Basic Information


Item Value
RNA id XM_021559373.2
length 1296
RNA type mRNA
GC content 0.55
exon number 8
gene id LOC110487436
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 63814079 ~ 63821216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGTGGCGGCAATACACCTTTTGGGGTTGTCGTCCTCCATGAaacccacagaagaagaagaatggcTTCCTCTGAAACGCATGATGATTCAACGCACAGCAATTAGCTTCGGACTCAACTAGAATGTTCTAGTACCGTTACATTCTTGTACAGTATTAAAGGGCAGCGAAATAAGAACCAACTTTAACATTGTGATACTCGGCGTTTTGAACAAACAGAGCATCATGGCAGAAGACCAACGCAACAGGAGACATCCCCAAAACCTCCAGGGTGTCCTTCGATTGGCTGTGGAGGCTGGCTCTGCTGCAGATGGACCCGCCCTCCCTGAACCCATGTCAGAGGAGAGGAAAGAATGGTTGAAAGGAGCTCTTGCGGAAGTGGCCAAAGGACAGAACAGCGAGGTGGAACAGATGAAGGAGTGTATGCGCGTTCTGCTGAGAGATGGAGggtgtgagagggggagagagggagaggaggaaggagaggatgaagagggggagacagaaggggCACTGGAGTTTCTCTCAGAGCTGTGTGAGAACCTAGACAATGCCAGAGaccTGATGACCCTGGGTGGGTTGGACCTGTGTATGTCGCAGTGCTTGAACCATCCTCAGGGCAGCGTGAGGTGGCGTGGTGCCCAGCTCATCGCCTCCTGTGCCCAGAACATGCCCCAAGTGCAGTGCCACTTACTCAGCAAGGGGGCGCTACCCAAACTGCTACAGCTGACTGACTCAGATCCCCACCCCACCGTTCGAGTGAAGGCCCTCTACGCTGTCTCCTgtcTGGTGCGGGAGCAGGAAGTAGGTCTCCGGGCCTTCCTCTCTCACGATGGCTTCTCTGTGCTGATGAGAGGCATGCAGTCTGACAACGAGAAACTGAGGACCAAGTCGTCTTTCTTACTCCTCAACCTGCTCACAGTCCACCCAGAGCATAAAGataCAGTTCTCTCCATGGGTATGGTGCAACAGCTGGTGTCTGTTCTACGCACGCCCCACTCCTCCTTCCACGAGCACGTGCTCGGCGCCCTCTGCTGCCTGGTGGAGGAGAGTCCTCTGGGTCTGAGGGACTGTCAGAGCCCTACCTTGGGGCTGGAGGAGATGCTCAACCAGCGGGCTGAAGATctgcaggggagagaggagtgtcAGGAAGAGTTGGAGTTCTGCAAGCGCTTGCGTTCTGCTTGTTTCTGCAGACGGCAACCTGACGACAGTGGAATGGATCGCTGAAATCCAACTGGTCCTCCACTTCTCCTGCAGTGCCGTCATTGGCTAGGAGACATAGGAGGACAttattt

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1363681 lncRNA upstream 15611 63798254 ~ 63798469 (+) True G1195190
TU1363678 lncRNA upstream 16368 63797266 ~ 63797712 (+) True LOC110487460
TU1363720 lncRNA upstream 58337 63748024 ~ 63755743 (+) True G1195224
TU1363715 lncRNA upstream 67368 63743556 ~ 63746712 (+) False G1195221
TU1363745 lncRNA downstream 6311 63826530 ~ 63826870 (+) True G1195245
TU1363728 lncRNA downstream 17388 63837607 ~ 63839336 (+) False LOC110511852
TU1363730 lncRNA downstream 17388 63837607 ~ 63839336 (+) True LOC110511852
TU1363747 lncRNA downstream 28809 63849028 ~ 63850169 (+) True G1195247
TU1363755 lncRNA downstream 43316 63863535 ~ 63863840 (+) True G1195252
XM_036939780.1 mRNA upstream 16346 63757401 ~ 63797734 (+) False LOC110487460
XM_036941895.1 mRNA upstream 72739 63733318 ~ 63741341 (+) True LOC118936528
XM_036941891.1 mRNA upstream 102378 63700749 ~ 63711702 (+) False LOC110487456
XM_036941904.1 mRNA downstream 7710 63827929 ~ 63837868 (+) False LOC110511852
XM_036941905.1 mRNA downstream 7713 63827932 ~ 63837868 (+) False LOC110511852
XR_005035640.1 mRNA downstream 11890 63832109 ~ 63835703 (+) False LOC110511852
XM_036941894.1 mRNA downstream 46354 63866573 ~ 63903684 (+) False LOC110487419
XM_036941903.1 mRNA downstream 136147 63956366 ~ 63960921 (+) True LOC110487028
TU1363718 other upstream 59395 63752948 ~ 63754685 (+) True G1195223
TU1363689 other upstream 104630 63700771 ~ 63709450 (+) False LOC110487456
TU1363677 other upstream 122023 63686023 ~ 63692057 (+) True LOC118936377
TU1363105 other upstream 709986 63103300 ~ 63104094 (+) True G1194741
TU1363103 other upstream 722738 63090303 ~ 63091342 (+) True G1194739
TU1363769 other downstream 46459 63866678 ~ 63870702 (+) True LOC110487419
TU1363998 other downstream 498912 64319131 ~ 64332402 (+) False G1195428
TU1363999 other downstream 498912 64319131 ~ 64332402 (+) True G1195428
TU1364020 other downstream 565378 64385597 ~ 64385993 (+) True G1195442
TU1364022 other downstream 570786 64391005 ~ 64391512 (+) False G1195444

Expression Profile


XM_021559373.2 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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XM_021559373.2 Expression in each Bioproject

Bar chart with 20 bars.
XM_021559373.2 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.