RNA id: XM_036941955.1



Basic Information


Item Value
RNA id XM_036941955.1
length 2000
RNA type mRNA
GC content 0.57
exon number 15
gene id LOC110487480
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64798656 ~ 64945651 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAGAAGGCGGGTGGTGCTCTTGTAATTGGAAAAGCTCCGCGATGTGACAAGACGCTTTGGCGAACACCGCAGAGATTGATTGCGTGAGAGGGATTTGAGTGGGTGCAACCGACCAAGAGAATCTTCCGGTTACTGTCTTTCTTTCAGGCACACGTACCTTCGCGGTAAATCGCATCACATCGTCTCCTCGTTTAGGCTACTCTCTCTACCCATTCGGCGTATTTCACTCGGATAACTTCTCTCTAAAGGAAAATACTGTTTATGGTTTTGACCGAAGATTTCAAGATGTCTCGCACCGACGAGGTTCACCGCATAACGGAGAATGTCTACAAGtccatCATGGAACAGTTCAACCCCTGCTTGCGGAACTTCGTTGCCATGGGGAAGAGCTATGAGAAGGCCCTATCCAATGTGACGTTTGCTGCTAAGGGCTACTTTGATGCCCTGGTGAGGATGGGAGAGCTAGCCAGTGAGAGCCAGGGATCCAAGGACATGGGGGACGTGCTGTTTCAGATGGCTGAGGTCCACAGACAGATCCAAGTACAGCTAGAGGAGATGCTGAAGTCTTTCCACAACGAGCTGCTGTCTGAGCTGGAGAAGAAGGTTGAGCTGGATGCTCGTTACCTGACGGCTGCGTTGAAGAAGTACCAAGTGGAGCACAAGAGTAAGGGAGAGAGTCTGGAGAAGTGTCAGGCTGAACTGAAGAAACTCCGCAGGAAGAGCCAGGGCAGCAAGAACCCCTCCAAGTACGGAGAGAAGGAGATGCAGttTGTGGAGACCATCAGTAGTAAGCAGAGTGAACTGGACACCTTCATAGCAGAGGGCTACAAGACTGCTCTGTCTGAGGAGCGCAGGAGGTACTGTTTCCTGGTGGACAGACAGTGTGCTGTGGCCAAGAACAGCAGCGCCTACCACGGCAAGGGTAAAGACCTGCTGACCCAGAAGATCCCAGTATGGCAGCAGGCTTGTTCAGACCCCAACAAGCTACCAGAGCGGGCCATGCTCCTAGCCCAGCAGATGGGCTCCGGGTCCAGCACGGGCACCGCTTCCCTGACCATGGGGGGCTCCAGCCCCCTGAACACCTCCAAGTCTAACCTGTCCAACCTGGTCATCTCTGACCCCATCCCCGGGGCTCAGCCACTCCCTGTCCCCCCAGAACTGGCTGTCTTCATGGGTGGTGGGCTGGGGCACCAGGCGAGGCTGATGGGTTCAGATGGGATGTCCATGGTGAACGGTACGACAGGACTCCACGGAGAGGAAGAGTACTGGACAGAGGGGGGGGTGTCAGTCTCCCAGCTCCAAGGAAGACCCTCCTCCCCCCAGGCCCCTTCCCTACCCCAGGGACAGGCCCCCACCCAGAGACAGGTCAGTGAGCACTACTCCAATACCCTGCCCGTCCGCAGGCCCCAGCCTGCCAAGAACAAGACCTCTGTTGGTGAGACCCGTACCCTGCCCAGGTCTAGCTCCATGGCAGCGGGGCTGGAGAAGAACGGTCGTGCCCGTGTCCAGGCCATCTTCTCCCACGCGGCCGGAGACAACAGCACCCTGCTCAGCTTCTCTGAGGGAGACGTCATCACCCTGCTGGTCCCAGAGGCCCGTGACGGATGGCACTATGGGGAGAACGAGAAGAACAAGATGCGTGGCTGGTTCCCCTTCTCTTACACACGGGTGCTgccagagagtgagaaggagaagcTCCAGTCTGCACCATGGGAAGAGCAGCAGTACCGGGAACCTGCTGGAGAGCGACATGTCTCTGCCCATGCCCGACTACGGCCTGACTGCCCGCCTGCTGGCACAGAGCCTGGCACAGAGCAGACCCAGGCCCTACAGCATGGCAGGCTTTACCACACAGCCTGCCCTTGAGGACTATGACAGTCGCTTTGCTGCTGCAAGTTCTGATCCCGATGGCAAATTGATTTCGACAGTgtgagaacagacagacagagacagctccCTACCGGATAGCACAGGGGccgccccctctctccccccccccc

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1364682 lncRNA downstream 5294 64800092 ~ 64800937 (-) True LOC110487480
TU1364684 lncRNA downstream 6256 64799129 ~ 64799975 (-) False LOC110487480
TU1364680 lncRNA downstream 7175 64798658 ~ 64799056 (-) False LOC110487480
TU1364681 lncRNA downstream 7334 64798658 ~ 64798897 (-) False LOC110487480
TU1364838 lncRNA downstream 12644 64793255 ~ 64793587 (-) True G1196112
TU1364985 lncRNA upstream 184 64945835 ~ 64946577 (-) True G1196206
TU1364990 lncRNA upstream 11627 64957278 ~ 64960551 (-) False G1196208
TU1364992 lncRNA upstream 14438 64960089 ~ 64961357 (-) True G1196209
TU1364994 lncRNA upstream 21000 64966651 ~ 64966949 (-) True G1196210
TU1365000 lncRNA upstream 22235 64967886 ~ 64968303 (-) True G1196214
XM_036941944.1 mRNA downstream 131198 64667592 ~ 64675033 (-) True LOC110486630
XM_036941945.1 mRNA downstream 144190 64641877 ~ 64662041 (-) False LOC110510722
XM_036941941.1 mRNA downstream 150744 64653378 ~ 64655487 (-) True LOC110511879
XM_021591968.2 mRNA downstream 156845 64641877 ~ 64649386 (-) False LOC110510722
XM_036941958.1 mRNA upstream 5892 64951543 ~ 64954224 (-) False LOC118938356
XM_036941959.1 mRNA upstream 5892 64951543 ~ 64954224 (-) False LOC118938356
XM_036941960.1 mRNA upstream 5892 64951543 ~ 64954224 (-) False LOC118938356
XM_036941961.1 mRNA upstream 5892 64951543 ~ 64954224 (-) False LOC118938356
XM_036941962.1 mRNA upstream 5892 64951543 ~ 64954224 (-) True LOC118938356
TU1364849 other downstream 11160 64794648 ~ 64795071 (-) True G1196113
TU1364698 other downstream 328859 64476970 ~ 64477372 (-) True G1195997
TU1364357 other downstream 458824 64334693 ~ 64347407 (-) False LOC110487482
TU1364983 other upstream 6139 64951790 ~ 64963785 (-) True G1196205
TU1364987 other upstream 11627 64957278 ~ 64959397 (-) False G1196208
TU1364989 other upstream 11627 64957278 ~ 64960025 (-) False G1196208
TU1364988 other upstream 13837 64959488 ~ 64961176 (-) True G1196208
TU1365250 other upstream 307628 65253279 ~ 65254078 (-) True G1196409

Expression Profile


XM_036941955.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: -0.5 to 0.5.
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XM_036941955.1 Expression in each Bioproject

Bar chart with 4 bars.
XM_036941955.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.