RNA id: XM_036941961.1



Basic Information


Item Value
RNA id XM_036941961.1
length 1895
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118938356
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 64951543 ~ 64954224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCAGCTGTGGATGGATCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGTAGCTGTGGAAGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATATCAACAGTAGCTATGGATGGAGCTAGTCCAACTgactcaacaacaacaatatcaacaGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAATAACAGCAATACCAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAACAACAATATCAACAGTAGCTGTGGATGGAGCTAGTCCAGCTGACTCAATAACAGTAGCTGTGGATGTAGCTAGTCCAACTGACTCAATAACAACAACAGTAGCTGTGGATGGAGCTAGTCCAACTGACTCAAcaacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTCCAACTGACtcaataacaacaacatcaacagtaGCTATGGATGGAGCTAGTACAACTAACTCAACAACATCAACAGTAGCTATGGAGGGAGCTAGTACAACTAACTCAACAACATCAACAGTAGCTATGGATGGAGCTAGTACAACTGACtcaataacaacaacatcaacagtaGCTATGGAGGGAGCTAGTACAACTAACTCAACAACATCAACAGTAGCTATGGAGGGAGCTAGTACAACTAACTCAACAACATCAACAGTAGCTATGGATGGAGCTAGTACAACTGACtcaataacaacaacatcaacagtaGCTATGGAGGGAGCTAGTACAActaactcaacaacaacaacagtagctaTGGATGGAGCTAGTCATCATGCTGGTTGCTCACTGCATGGAGGAGCAGAATCCATCCATCCAGACTCACTCTGCTGGTCTGTCCAGTCCCTGATCCCCCTCTGTCTCATAGAATGGAGTGCAGGTACAGAAGTACACATTCCTCTTCGTAAAAACTTTATTGTCCCAACGCTGAACAATATGATTTGTAGCAAAAACGGGAacaaatgtgtacacacacagatgtgtacaagcagacacacacacaccaccaggcCTAGGAGAACATCTGTGCTGAAGTCTCCTCTGGTCACTCTGTTTTTAATGATGAATTAAACACTAAAGGGAAAATGATTGCCGTCTCTCAGTATATGGTTTGGATTGATTGGTAGCATGTTGTCACTGTACAAATTCCTTTTGTAATTCACACGACTGATAAATGAAGTAAGACGTAACCGAAGATAATGTCATTTTAAAACCGTTGTTCTCCATAATTAAAAGGCGGAGCTGTGGCTTACAGACAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1364985 lncRNA downstream 4966 64945835 ~ 64946577 (-) True G1196206
TU1364903 lncRNA downstream 20068 64931175 ~ 64931475 (-) True G1196157
TU1364895 lncRNA downstream 37148 64914019 ~ 64914395 (-) True G1196150
TU1364894 lncRNA downstream 39104 64909661 ~ 64912439 (-) True G1196149
TU1364888 lncRNA downstream 43853 64907290 ~ 64907690 (-) True G1196147
TU1364990 lncRNA upstream 3054 64957278 ~ 64960551 (-) False G1196208
TU1364992 lncRNA upstream 5865 64960089 ~ 64961357 (-) True G1196209
TU1364994 lncRNA upstream 12427 64966651 ~ 64966949 (-) True G1196210
TU1365000 lncRNA upstream 13662 64967886 ~ 64968303 (-) True G1196214
TU1364997 lncRNA upstream 15414 64969638 ~ 64970035 (-) False LOC118936529
XR_005035649.1 mRNA downstream 5892 64802172 ~ 64945651 (-) False LOC110487480
XM_036941966.1 mRNA upstream 14952 64969176 ~ 65045461 (-) False LOC118936529
XM_036941965.1 mRNA upstream 14953 64969177 ~ 65045461 (-) False LOC118936529
XM_036941967.1 mRNA upstream 533724 65487948 ~ 65503391 (-) False LOC118938357
XM_036941968.1 mRNA upstream 533724 65487948 ~ 65503392 (-) False LOC118938357
XM_036939784.1 mRNA upstream 1265841 66220065 ~ 66222906 (-) False LOC118938101
TU1364849 other downstream 156472 64794648 ~ 64795071 (-) True G1196113
TU1364698 other downstream 474171 64476970 ~ 64477372 (-) True G1195997
TU1364357 other downstream 604136 64334693 ~ 64347407 (-) False LOC110487482
TU1364987 other upstream 3054 64957278 ~ 64959397 (-) False G1196208
TU1364989 other upstream 3054 64957278 ~ 64960025 (-) False G1196208
TU1364988 other upstream 5264 64959488 ~ 64961176 (-) True G1196208
TU1365250 other upstream 299055 65253279 ~ 65254078 (-) True G1196409
TU1365418 other upstream 515223 65469447 ~ 65472652 (-) True G1196536

Expression Profile


XM_036941961.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 6.
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XM_036941961.1 Expression in each Bioproject

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XM_036941961.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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