RNA id: TU1295240


Basic Information

Item Value
RNA id TU1295240
length 695
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1136874
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2708532 ~ 2712226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attctattcctttctagatgagaccattctattcatttcaagatgagaccattctattcctttctagatgagaccattctattcctttctagatgagaccattctattcctttcaagatgagaccattctattcctttcaagatgagaccatactattcctttctagatgagaccattctattcctttcaagatgagaccattctattcctttcaagatgagaccatactattcatttctagatgagaccattctattcctttcaagatgagaccatactattcatttctagatgagaccattctattcctttcaagatgagaccattctattcctttcaagatgagaccatactattcctttcaagatgagaccattctattcatttcaagatgagaccattctattcctttctagatgagaccattctattcctttcaagatgagaccatacTATTCCTTTccagatgagaccattctattcctttcaagatgagaccattctattcatttcaagatgagaccatactattcatttctagatgagaccatactattcctttcaagatgagaccattctattcctttcaagatgagaccattctattcctttcaagatgagaccattctattcatttcaagatgagaccattctattcctttctagatgagaccatactattcctttcaagatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1295144 lncRNA downstream 48042 2659511 ~ 2660490 (-) False G1136790
TU1295146 lncRNA downstream 48042 2659511 ~ 2660490 (-) True G1136790
TU1295191 lncRNA downstream 79404 2628625 ~ 2629128 (-) True G1136831
TU1295164 lncRNA downstream 136304 2571850 ~ 2572228 (-) True G1136808
TU1295161 lncRNA downstream 142965 2565006 ~ 2565567 (-) True G1136805
TU1295260 lncRNA upstream 16405 2728631 ~ 2729689 (-) False LOC110495017
TU1295261 lncRNA upstream 16405 2728631 ~ 2729851 (-) True LOC110495017
TU1295296 lncRNA upstream 77599 2789825 ~ 2790387 (-) True LOC110493365
TU1295277 lncRNA upstream 142357 2854583 ~ 2881323 (-) True G1136900
TU1295338 lncRNA upstream 165819 2878045 ~ 2889026 (-) True G1136956
XM_036942549.1 mRNA downstream 189884 2507219 ~ 2518648 (-) False LOC118938509
XM_036942270.1 mRNA downstream 204781 2497294 ~ 2503751 (-) True LOC110487163
XM_036942302.1 mRNA downstream 216512 2481608 ~ 2492020 (-) True LOC110493356
XM_036942548.1 mRNA downstream 239670 2444443 ~ 2468862 (-) True LOC118938508
LOC110518365 mRNA downstream 277413 2380096 ~ 2431119 (-) True LOC110518365
XM_036942210.1 mRNA upstream 17573 2729799 ~ 2737749 (-) False LOC110495017
XM_036942213.1 mRNA upstream 17573 2729799 ~ 2737749 (-) False LOC110495017
XM_036942211.1 mRNA upstream 17573 2729799 ~ 2748330 (-) False LOC110495017
XM_036942212.1 mRNA upstream 17573 2729799 ~ 2748424 (-) False LOC110495017
XM_036942197.1 mRNA upstream 32014 2744240 ~ 2752006 (-) True LOC118938394
TU1294843 other downstream 186171 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 193614 2508263 ~ 2514918 (-) True LOC118938509
TU1294697 other downstream 463214 2187440 ~ 2245318 (-) True G1136455
TU1294682 other downstream 520821 2171650 ~ 2187711 (-) False G1136447
TU1294663 other downstream 538093 2129718 ~ 2170439 (-) True G1136432
TU1295328 other upstream 146805 2859031 ~ 2860041 (-) True G1136948
TU1295641 other upstream 417387 3129613 ~ 3130553 (-) True G1137174
TU1295655 other upstream 449053 3161279 ~ 3188184 (-) True LOC110514041
TU1296158 other upstream 816213 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 1019395 3731621 ~ 3733300 (-) True G1137666

Expression Profile