RNA id: TU1295349



Basic Information


Item Value
RNA id TU1295349
length 207
lncRNA type intronic
GC content 0.34
exon number 1
gene id G1136967
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 2918607 ~ 2918813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTCACAACTGTTTTAGAATATAgtttatgaccaaaatgatcctacTTATTTACACTTTAGTCAATATTGAAAGTGGAATAAATGTTTGACTAATATCGATGCCACAGAAGCCATTTTCAACCAGAGAAGTTGGTTTTTGCATTAAGTTGCTCTTTAATTTTGTTGGGATGTCAGCCAGAGGGCTGGTACATTAACAGAGCATTGAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1295347 lncRNA downstream 4968 2912186 ~ 2913639 (-) True G1136965
TU1295346 lncRNA downstream 9263 2908534 ~ 2909344 (-) True G1136964
TU1295280 lncRNA downstream 14545 2903750 ~ 2904062 (-) True G1136903
TU1295338 lncRNA downstream 29581 2878045 ~ 2889026 (-) True G1136956
TU1295277 lncRNA downstream 37284 2854583 ~ 2881323 (-) True G1136900
TU1295351 lncRNA upstream 5052 2923865 ~ 2924128 (-) True G1136969
TU1295298 lncRNA upstream 7754 2926567 ~ 2926829 (-) True G1136919
TU1295515 lncRNA upstream 21271 2940084 ~ 2940545 (-) True G1137082
TU1295516 lncRNA upstream 23152 2941965 ~ 2942914 (-) True LOC110514903
TU1295519 lncRNA upstream 31606 2950419 ~ 2950684 (-) True G1137086
XM_036942293.1 mRNA downstream 122305 2789766 ~ 2796302 (-) False LOC110493365
XM_036942292.1 mRNA downstream 122329 2789766 ~ 2796278 (-) False LOC110493365
XM_036942291.1 mRNA downstream 124481 2789766 ~ 2794126 (-) False LOC110493365
XM_021567603.2 mRNA downstream 131078 2782314 ~ 2787529 (-) True LOC110493340
XM_036942277.1 mRNA downstream 137288 2773981 ~ 2781319 (-) True LOC110493346
XM_036942192.1 mRNA upstream 23275 2942088 ~ 2967554 (-) False LOC110514903
XM_036942191.1 mRNA upstream 23275 2942088 ~ 2967787 (-) False LOC110514903
XM_036942193.1 mRNA upstream 23275 2942088 ~ 2967787 (-) False LOC110514903
XM_036942194.1 mRNA upstream 23275 2942088 ~ 2967787 (-) False LOC110514903
XM_036942195.1 mRNA upstream 23275 2942088 ~ 2967787 (-) False LOC110514903
TU1295328 other downstream 58566 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 396246 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 403689 2508263 ~ 2514918 (-) True LOC118938509
TU1294697 other downstream 673289 2187440 ~ 2245318 (-) True G1136455
TU1294682 other downstream 730896 2171650 ~ 2187711 (-) False G1136447
TU1295641 other upstream 210800 3129613 ~ 3130553 (-) True G1137174
TU1295655 other upstream 242466 3161279 ~ 3188184 (-) True LOC110514041
TU1296158 other upstream 609626 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 812808 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 846469 3765282 ~ 3765816 (-) True G1137672

Expression Profile