RNA id: TU1295612


Basic Information

Item Value
RNA id TU1295612
length 1412
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G1137147
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3083394 ~ 3084944 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAAAGGGGTGGAGTCAACTGACAGACCACACCCATTCTGTCCCAGCTGCAGCGAGGAGCTCCAATCAGAATCGCACTGGTTTAAACCAGTTTGACccatgcagagagacagagagaggcctgagagagagagatagtttgGTTCAGAGGGGATGGAGGTGAGATTGGTTGGGTAGCGGTTTTAAGTTCTAGGTTCTAGGTAACAGTTCAAAAGCCGGTTCTGAGTTCTAGGTGACTAGaaggggagggagtggagggtggaACGACGCctataaaataaaacaaacaaattatGAATAACAAAATCAAACAGATCATGTGCTATTAAACTggaaatgagggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGgtagaagtgggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAGTGGGGGAGGGGGTTAATATAAAGATGGGGTCATGGAGAAAGGGACTATGGGTagaagtgtggggggggggttaatataaagatGGGACTATGGAGAAAGGGACTATGGGtagaagtggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGtagaagtggggggggggtaatatAAAGATGGGGTTATGGAGAAAGGGACTATGGGTAGAAGTGGGGTGGAGGTGTGGGGGTTAATATAAAGATGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtgggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtgaggtggaggtggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAgtggggtggaggtggggggggggggttaatataaagatGGGGTCATGGAGAAAGGGACTATGGGTAGAAACTGGAGCAGGGTGAAGTTTAGCATTTTCCACAAATGGTTAACGTCAGGATTGGAGAGGGGAATCTGATCCTAGAGCTGACTCTGCAAATACTGGCCCGGTGCAGGTTTTCAATGGGTCAGGCTAATGCTAGCGATACTAGCCCAATTAACGCTAGGGAAGTTAGCATCTTCACAGCATGTTTTCAATAAGACAAGCTAACGCTAGTAAAGGGTGTAGCTAGGTCTGAAAAGGTCAAAAGTCTAAAGGAAGGATTCAATTCATGACAGAGTCATTTCTCCTCCttcgcctctccctccctctctggttcttcCTCATCTTCTTTGTCCTCTTCCTCGTCTTCTTCTTTGTCCTCTTCGTTGTCGGTATTGGCGTTGGGAACCCAGAGTCCTGAGTCAATACACCTCTTCATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1295614 lncRNA downstream 2695 3078991 ~ 3080699 (-) True G1137148
TU1295557 lncRNA downstream 8916 3053022 ~ 3074478 (-) False G1137106
TU1295550 lncRNA downstream 13103 3053022 ~ 3070291 (-) False G1137106
TU1295552 lncRNA downstream 28076 3047967 ~ 3055318 (-) False G1137106
TU1295606 lncRNA upstream 512 3085456 ~ 3085762 (-) True G1137146
TU1295615 lncRNA upstream 1817 3086761 ~ 3086960 (-) True G1137149
TU1295616 lncRNA upstream 2098 3087042 ~ 3087308 (-) True G1137150
TU1295632 lncRNA upstream 26376 3111320 ~ 3113165 (-) True G1137166
TU1295643 lncRNA upstream 60611 3145555 ~ 3146205 (-) True G1137176
XM_036942191.1 mRNA downstream 115607 2942088 ~ 2967787 (-) False LOC110514903
XM_036942217.1 mRNA upstream 48059 3133003 ~ 3158833 (-) False LOC110493360
XM_036942216.1 mRNA upstream 48059 3133003 ~ 3158838 (-) True LOC110493360
XM_036942234.1 mRNA upstream 76247 3161191 ~ 3196383 (-) False LOC110514041
XM_036942231.1 mRNA upstream 76247 3161191 ~ 3197978 (-) False LOC110514041
XM_036942232.1 mRNA upstream 76247 3161191 ~ 3197982 (-) False LOC110514041
TU1295328 other downstream 223353 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 561033 2521827 ~ 2522361 (-) True G1136568
TU1294826 other downstream 568476 2508263 ~ 2514918 (-) True LOC118938509
TU1294697 other downstream 838076 2187440 ~ 2245318 (-) True G1136455
TU1294682 other downstream 895683 2171650 ~ 2187711 (-) False G1136447
TU1295641 other upstream 44669 3129613 ~ 3130553 (-) True G1137174
TU1295655 other upstream 76335 3161279 ~ 3188184 (-) True LOC110514041
TU1296158 other upstream 443495 3528439 ~ 3532124 (-) True LOC110487308
TU1296425 other upstream 646677 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 680338 3765282 ~ 3765816 (-) True G1137672

Expression Profile