RNA id: TU1296211


Basic Information

Item Value
RNA id TU1296211
length 496
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1137543
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3598777 ~ 3600123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTACTCTGTTCTACAAAACAAAAAGGTATATTACAGTATACCTCCATTATCGGACAGTATACGAGAGAGTCCTGCACTCAGATCAGGCCTTACATTCCTGGGGCCGCATCAATGGTCtcagagctgatctaggatctgttttGTCTTTAAGATTATAACAAATACAATGATATGGACAGggagaacctgatcctagatcagcactcctactaaaATGATACATAACAGCCCCATGGACTAAGAAACACTTAAAATGGAGATTCTCATCTGGGTCCATGAGTGTGTTTCATCTGGGTCCATGAGTGTGTTTCATCTGGGTCCATGAGTGTGTTTCATCTGGGTCCATGAGTGTGTTTCATCTGGGTCCGGGAAACCAGCCCTGTAAGAACTGGGTCAACTTAGACGACTAGTCTTCTAACATTAATTTACAGAGGAAAGACTGCCAGGTGACTAGGGTTGAAAAATTCTGTGAACTTTCAATGAATTCCCTGGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296209 lncRNA downstream 396 3597361 ~ 3598381 (-) True G1137542
TU1296183 lncRNA downstream 40828 3556950 ~ 3557949 (-) True G1137528
TU1296182 lncRNA downstream 46973 3550553 ~ 3551804 (-) True G1137527
TU1296165 lncRNA downstream 62285 3533574 ~ 3536492 (-) True LOC110517154
TU1296152 lncRNA downstream 92424 3505633 ~ 3506353 (-) True G1137506
TU1296228 lncRNA upstream 17175 3617298 ~ 3618910 (-) False G1137557
TU1296227 lncRNA upstream 17976 3618099 ~ 3618910 (-) True G1137557
TU1296250 lncRNA upstream 58235 3658358 ~ 3661831 (-) False G1137577
TU1296249 lncRNA upstream 58669 3658792 ~ 3661831 (-) True G1137577
TU1296258 lncRNA upstream 70781 3670904 ~ 3672509 (-) False G1137583
XM_036942159.1 mRNA downstream 14397 3572962 ~ 3584380 (-) False LOC110524887
XM_036942160.1 mRNA downstream 14397 3572962 ~ 3584380 (-) True LOC110524887
XM_036942163.1 mRNA downstream 16372 3572962 ~ 3582405 (-) False LOC110524887
XM_036942161.1 mRNA downstream 17880 3572962 ~ 3580897 (-) False LOC110524887
XM_036942178.1 mRNA downstream 44716 3533508 ~ 3554061 (-) False LOC110517154
XR_005035407.1 mRNA upstream 98621 3698744 ~ 3700326 (-) False LOC118938144
XR_005035408.1 mRNA upstream 101423 3701546 ~ 3702061 (-) False LOC118938145
XR_005035409.1 mRNA upstream 101423 3701546 ~ 3702061 (-) True LOC118938145
LOC118938513 mRNA upstream 248569 3848692 ~ 3891054 (-) False LOC118938513
XM_036939868.1 mRNA upstream 306768 3906891 ~ 3920630 (-) False LOC110493403
TU1296158 other downstream 66653 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 410593 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 468224 3129613 ~ 3130553 (-) True G1137174
TU1295328 other downstream 738736 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 1076416 2521827 ~ 2522361 (-) True G1136568
TU1296425 other upstream 131498 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 165159 3765282 ~ 3765816 (-) True G1137672
TU1297095 other upstream 794622 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 1019372 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 1558042 5158165 ~ 5162954 (-) True G1138568

Expression Profile